<p>ELE, electrostatic interactions; VDW, van der Waals interactions between the fragments; INT, internal energy arising from bond, angle and dihedral terms in the MM force field; GAS, total gas phase energy (sum of ELE, VDW and INT); PBSUR/GBSUR, nonpolar contribution to solvation; PBCAL/GB, the electrostatic contribution to the solvation free energy calculated by PB or GB respectively; PBSOL/GBSOL, sum of nonpolar and polar contributions to solvation; PBELE/GBELE, sum of the electrostatic solvation free energy and MM electrostatic energy; PBTOT/GBTOT, estimated total binding free energy calculated from the terms above.</p
1<p>: coulombic term;</p>2<p>: van der Waals term;</p>3<p>: polar solvation term;</p>4<p>: nonpolar ...
We present a binding free energy function that consists of force field terms supplemented by solvati...
<p>*The binding free energies of P-CAB complexes after 100 ns disassociation molecular dynamics.</p
An accurate estimation of binding free energy between protein and ligand, is one of the most importa...
AbstractA free energy decomposition scheme has been developed and tested on antibody–antigen and pro...
<p>ΔE<sub>ele</sub>: non-bonded electrostatic energy+1,4-electrostatic energy.</p><p>ΔE<sub>vdw</sub...
A method is proposed for the estimation of absolute binding free energy of interaction between prote...
We have compared the predictions of ligand-binding affinities from several methods based on end-poin...
<p>Δ<i>E</i><sub>ELE</sub> = electrostatic energy, Δ<i>E</i><sub>VDW</sub> = van der Waals energ...
<p>ΔG<i><sub>bind</sub></i> = Binding free energy.</p><p>ΔG<i><sub>coul</sub></i> = Electrostati...
Abstract Spontaneous changes in protein systems, such as the binding of a ligand to an enzyme or rec...
<p>The free binding energy (ΔG<sub>bind</sub>) and contributions of electrostatic (ΔG<sub>elec</sub>...
Binding free energy calculations offer a thermodynamically rigorous method to compute protein-ligand...
<p>The table shows the detailed contribution of energy components calculated using Poisson Boltzmann...
Delta total—final estimated binding free energy, Enpolar—nonpolar contribution to the solvation free...
1<p>: coulombic term;</p>2<p>: van der Waals term;</p>3<p>: polar solvation term;</p>4<p>: nonpolar ...
We present a binding free energy function that consists of force field terms supplemented by solvati...
<p>*The binding free energies of P-CAB complexes after 100 ns disassociation molecular dynamics.</p
An accurate estimation of binding free energy between protein and ligand, is one of the most importa...
AbstractA free energy decomposition scheme has been developed and tested on antibody–antigen and pro...
<p>ΔE<sub>ele</sub>: non-bonded electrostatic energy+1,4-electrostatic energy.</p><p>ΔE<sub>vdw</sub...
A method is proposed for the estimation of absolute binding free energy of interaction between prote...
We have compared the predictions of ligand-binding affinities from several methods based on end-poin...
<p>Δ<i>E</i><sub>ELE</sub> = electrostatic energy, Δ<i>E</i><sub>VDW</sub> = van der Waals energ...
<p>ΔG<i><sub>bind</sub></i> = Binding free energy.</p><p>ΔG<i><sub>coul</sub></i> = Electrostati...
Abstract Spontaneous changes in protein systems, such as the binding of a ligand to an enzyme or rec...
<p>The free binding energy (ΔG<sub>bind</sub>) and contributions of electrostatic (ΔG<sub>elec</sub>...
Binding free energy calculations offer a thermodynamically rigorous method to compute protein-ligand...
<p>The table shows the detailed contribution of energy components calculated using Poisson Boltzmann...
Delta total—final estimated binding free energy, Enpolar—nonpolar contribution to the solvation free...
1<p>: coulombic term;</p>2<p>: van der Waals term;</p>3<p>: polar solvation term;</p>4<p>: nonpolar ...
We present a binding free energy function that consists of force field terms supplemented by solvati...
<p>*The binding free energies of P-CAB complexes after 100 ns disassociation molecular dynamics.</p