<p><b>A</b>. A ‘to scale’ schematic of the seven uORFs within the <i>bzpR</i> 5′ UTR, color coded to correspond with panels B and C. <b>B</b>. The <i>bzpR</i> 5′ UTR sequence and the first nine codons (blue) of the coding region. The 5′ ends of the three primers, bzr-9, bzr-10, and bzr-5, used in RT-PCR to localize the transcriptional start site, are indicated. Transcription likely starts between the two underlined regions. The sequence shown was fused to the GFP gene in pbzpR-17. The italicized region, consisting only of the ribosome binding site and the first 9 codons, is the no-UTR control fused to the GFP and RFP genes in pbzpR-14 and to the RFP gene in pbzpR-17, -53, and -54. The larger font T and A in the first and last uORFs represen...
<p>(<b>A</b> and <b>B</b>) Promoter detection in the <i>pltR</i> direction. (A) Four fragments, R1 t...
<p>PCR products of entry plasmids (pE) containing basic parts such as promoters (PR), coding sequenc...
<p>(<b>A</b>) Statistics of the 66 primer pairs used to measure transcriptional levels in plasmid R3...
<p>Ax4 cells were transformed with the various <i>bzpR</i> 5′ UTR constructs: pbzpR-14 (no-UTR GFP, ...
<p><b>A</b>. Diagram depicting wild-type and mutated L 5′-UTR-GFP reporter constructs in which the l...
<p><b>A</b>. Diagram depicting the in vitro generated L 5′-UTR GFP mRNA reporter constructs with per...
<p><b>A</b>. RNA and genomic DNA were isolated from growing Ax4 cells and used as templates in RT-PC...
<p><b>A)</b> Blr1853 locus and the structure of <i>lacZYA</i> reporter fusions used to analyze trans...
<p>(A) A schematic diagram of the transcriptional fusion of the <i>rpoS</i> promoter and 5’ untransl...
Anscriptional start sites (TSSs). The sequences are represented by solid grey rectangles. Cotranscri...
<p>The region of the <i>P. chlororaphis</i> 30–84 chromosome that contains the promoter of the phena...
<p>(A) 5′ RACE was performed on cells transduced with <i>eGFP</i>←D4Z4 lentivirus using primers base...
<p>(A) NHEJ was monitored using the pEJ5-GFP plasmid integrated at interstitial (not shown) or telom...
<p>(A) Repression by Fis <i>in vitro</i>. i) Schematic of the <i>cbpA</i> regulatory region DNA used...
The plasmids contain two transcription units. GFP expression is driven by an inducible rRNA promoter...
<p>(<b>A</b> and <b>B</b>) Promoter detection in the <i>pltR</i> direction. (A) Four fragments, R1 t...
<p>PCR products of entry plasmids (pE) containing basic parts such as promoters (PR), coding sequenc...
<p>(<b>A</b>) Statistics of the 66 primer pairs used to measure transcriptional levels in plasmid R3...
<p>Ax4 cells were transformed with the various <i>bzpR</i> 5′ UTR constructs: pbzpR-14 (no-UTR GFP, ...
<p><b>A</b>. Diagram depicting wild-type and mutated L 5′-UTR-GFP reporter constructs in which the l...
<p><b>A</b>. Diagram depicting the in vitro generated L 5′-UTR GFP mRNA reporter constructs with per...
<p><b>A</b>. RNA and genomic DNA were isolated from growing Ax4 cells and used as templates in RT-PC...
<p><b>A)</b> Blr1853 locus and the structure of <i>lacZYA</i> reporter fusions used to analyze trans...
<p>(A) A schematic diagram of the transcriptional fusion of the <i>rpoS</i> promoter and 5’ untransl...
Anscriptional start sites (TSSs). The sequences are represented by solid grey rectangles. Cotranscri...
<p>The region of the <i>P. chlororaphis</i> 30–84 chromosome that contains the promoter of the phena...
<p>(A) 5′ RACE was performed on cells transduced with <i>eGFP</i>←D4Z4 lentivirus using primers base...
<p>(A) NHEJ was monitored using the pEJ5-GFP plasmid integrated at interstitial (not shown) or telom...
<p>(A) Repression by Fis <i>in vitro</i>. i) Schematic of the <i>cbpA</i> regulatory region DNA used...
The plasmids contain two transcription units. GFP expression is driven by an inducible rRNA promoter...
<p>(<b>A</b> and <b>B</b>) Promoter detection in the <i>pltR</i> direction. (A) Four fragments, R1 t...
<p>PCR products of entry plasmids (pE) containing basic parts such as promoters (PR), coding sequenc...
<p>(<b>A</b>) Statistics of the 66 primer pairs used to measure transcriptional levels in plasmid R3...