<p>(A) Northern analysis of total RNAs obtained from wild-type and <i>CLP1</i> D161A and <i>CLP1</i> K136A T137A mutant strains following growth in YPD. Probes were as described in the legend of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0029139#pone-0029139-g001" target="_blank">figure 1C</a>. (B) qRT-PCR analysis of candidate mRNAs that were identified during gene expression profiling of <i>CLP1</i> D161A and <i>CLP1</i> K136A T137A mutant strains. Transcript levels are presented relative to wild-type <i>CLP1</i>, which was fixed at 100%. Data shown are the mean of three independent biological replicates and error bars indicate standard deviation.</p
<p>(A) Schematic depiction of the <i>CHA1</i> gene indicating the positions of the probes (A–I) used...
<p>Genomic DNA-free total RNA from wild-type <i>E</i>. <i>chaffeensis</i> (lane 1) and clonal mutant...
<p>Isogenic WT (MLY41) and quadruple <i>sap</i> (JRY40) mutant strains transformed with vector or pl...
<p>qPCR was used to measure the expression of <i>CLN1</i> and <i>CLN2</i> in two of the suppressor s...
<p>(A) Schematic presentation of the Clp1 fusion gene, which is expressed under the control of <i>GA...
(A) Overview of log2 transformed fold changes comparing UPR core gene expression after TM treatment ...
<p>(A) Quantitative PCR to determine transcript levels of over-represented proteins upon depletion o...
<p>The relative <i>clpB</i> transcript abundance was normalized against the amplification of a fragm...
<p>(A, D) Schematic representations of <i>INO1</i> and <i>CHA1</i> showing the positions of the prim...
<p>(A) PCR verification of gene deletion. Lane 1, a 42,725 bp fragment was amplified using primers Z...
<p>(<b>A</b>) Western blot analysis of FPA protein levels. Three independent <i>clf-50 fpa-10</i> sa...
<p>(<b>A</b>) Expression levels were assessed for genes identified by RNA-seq as induced in <i>Clhst...
<p>Mutations from invasive descendants of glutamine- and ammonium-limited populations were reconstit...
<p>Δ <b><i>ybp1–2</i></b><b>) and GF5606 (</b><b><i>tsa1 YBP1</i></b><b>).</b> Quantitative RT-PCR a...
<p>Cells were serially diluted in steps of five and 5 µl were spotted onto selective media. Media us...
<p>(A) Schematic depiction of the <i>CHA1</i> gene indicating the positions of the probes (A–I) used...
<p>Genomic DNA-free total RNA from wild-type <i>E</i>. <i>chaffeensis</i> (lane 1) and clonal mutant...
<p>Isogenic WT (MLY41) and quadruple <i>sap</i> (JRY40) mutant strains transformed with vector or pl...
<p>qPCR was used to measure the expression of <i>CLN1</i> and <i>CLN2</i> in two of the suppressor s...
<p>(A) Schematic presentation of the Clp1 fusion gene, which is expressed under the control of <i>GA...
(A) Overview of log2 transformed fold changes comparing UPR core gene expression after TM treatment ...
<p>(A) Quantitative PCR to determine transcript levels of over-represented proteins upon depletion o...
<p>The relative <i>clpB</i> transcript abundance was normalized against the amplification of a fragm...
<p>(A, D) Schematic representations of <i>INO1</i> and <i>CHA1</i> showing the positions of the prim...
<p>(A) PCR verification of gene deletion. Lane 1, a 42,725 bp fragment was amplified using primers Z...
<p>(<b>A</b>) Western blot analysis of FPA protein levels. Three independent <i>clf-50 fpa-10</i> sa...
<p>(<b>A</b>) Expression levels were assessed for genes identified by RNA-seq as induced in <i>Clhst...
<p>Mutations from invasive descendants of glutamine- and ammonium-limited populations were reconstit...
<p>Δ <b><i>ybp1–2</i></b><b>) and GF5606 (</b><b><i>tsa1 YBP1</i></b><b>).</b> Quantitative RT-PCR a...
<p>Cells were serially diluted in steps of five and 5 µl were spotted onto selective media. Media us...
<p>(A) Schematic depiction of the <i>CHA1</i> gene indicating the positions of the probes (A–I) used...
<p>Genomic DNA-free total RNA from wild-type <i>E</i>. <i>chaffeensis</i> (lane 1) and clonal mutant...
<p>Isogenic WT (MLY41) and quadruple <i>sap</i> (JRY40) mutant strains transformed with vector or pl...