<p>OR: odds ratio; CI: confidence intervals.</p><p>The association of haplotype CC in block 4 remained statistically significant after correction for multiple testing (permutation <i>P</i> = 0.011).</p><p>*The <i>P</i>-values were calculated by the chi-square test on haplotype counts (1 degree of freedom).</p>†<p>The omnibus <i>P</i>-values were calculated by the PLINK software (4 degrees of freedom for block 1; 2 degrees of freedom for block 2, 4, and 5; 3 degrees of freedom for block 3).</p
<p>MHF: minor haplotype frequency; H1, H2, H3, H4 represented haplotype1, haplotype2, haplotype3, ha...
<p><sup>1</sup>: The overall association between haplotype and the trait</p><p><sup>2</sup>: Estimat...
<p>Allelic components of the presented haplotypes are rs3787138, rs1044396 and rs3787140 SNPs, respe...
1<p>The overall association between haplotypes and the response.</p>2<p>Estimated frequency of each ...
a<p>Frequencies are shown in parentheses.</p>b<p>Significant <i>P</i> values (<0.05) are in bold.</p...
1<p>Estimated frequency of each haplotype in the population.</p>2<p>The score for the haplotype, whi...
<p>The odds ratios are computed by comparing each haplotype against all other haplotypes pooled. Cas...
a<p>A total of 10,000 permutations were performed using Haploview v4.2 to obtain a measure of signif...
<p><sup>a</sup> Whole marker permutation test using chisq sum <i>p</i> value, the number of permutat...
*<p>Haplotypes are indicated in both the ACGT and the 1–2 (major-minor allele) formats. Haploview de...
We present a simple two-stage procedure to define haplotype blocks and construct a statistic to test...
<p>For graphical representation see <a href="http://www.plosone.org/article/info:doi/10.1371/journal...
BACKGROUND: Knowledge of phase, the specific allele sequence on each copy of homologous chromosomes,...
<p>As samples of rs12118043 genotype AA were few, dominant model with AA+AC versus CC was applied. L...
<p>Haplotype frequencies (HF), <i>P</i>-values (including omnibus <i>P</i>-values), and odds ratios ...
<p>MHF: minor haplotype frequency; H1, H2, H3, H4 represented haplotype1, haplotype2, haplotype3, ha...
<p><sup>1</sup>: The overall association between haplotype and the trait</p><p><sup>2</sup>: Estimat...
<p>Allelic components of the presented haplotypes are rs3787138, rs1044396 and rs3787140 SNPs, respe...
1<p>The overall association between haplotypes and the response.</p>2<p>Estimated frequency of each ...
a<p>Frequencies are shown in parentheses.</p>b<p>Significant <i>P</i> values (<0.05) are in bold.</p...
1<p>Estimated frequency of each haplotype in the population.</p>2<p>The score for the haplotype, whi...
<p>The odds ratios are computed by comparing each haplotype against all other haplotypes pooled. Cas...
a<p>A total of 10,000 permutations were performed using Haploview v4.2 to obtain a measure of signif...
<p><sup>a</sup> Whole marker permutation test using chisq sum <i>p</i> value, the number of permutat...
*<p>Haplotypes are indicated in both the ACGT and the 1–2 (major-minor allele) formats. Haploview de...
We present a simple two-stage procedure to define haplotype blocks and construct a statistic to test...
<p>For graphical representation see <a href="http://www.plosone.org/article/info:doi/10.1371/journal...
BACKGROUND: Knowledge of phase, the specific allele sequence on each copy of homologous chromosomes,...
<p>As samples of rs12118043 genotype AA were few, dominant model with AA+AC versus CC was applied. L...
<p>Haplotype frequencies (HF), <i>P</i>-values (including omnibus <i>P</i>-values), and odds ratios ...
<p>MHF: minor haplotype frequency; H1, H2, H3, H4 represented haplotype1, haplotype2, haplotype3, ha...
<p><sup>1</sup>: The overall association between haplotype and the trait</p><p><sup>2</sup>: Estimat...
<p>Allelic components of the presented haplotypes are rs3787138, rs1044396 and rs3787140 SNPs, respe...