<p>The maximum likelihood phylogenetic trees were constructed with reference sequences from all HIV-1 subtypes. The bootstrap values supporting the internal branches defining a subtype or a CRF are shown. Bootstrap values of 70% or greater provide reasonable confidence for assignment of an individual segment to one or the other genotype. The scale represents number of base substitutions per site.</p
<p>The phylogenetic trees were constructed using the Neighbor-Joining method. The bootstrap values o...
<p>Continual lines connected the inter-subtype recombination sequences of <i>pol</i> (left) and <i>e...
<p>A: Phylogenetic tree from concatenated regions assigned as subtype B from the BF1 recombinant iso...
<p>Phylogenetic trees were generated for newly sequenced HIV-1 <i>pol</i> (A) and <i>env</i> (B) gen...
<p>The bootstrap analysis was performed with 1000 replicates. The branches in red represent the reco...
<p>The ML tree was constructed by PhyML 3.0.1 and visualized in FigTree. HIV-1 group N sequence was ...
<p>The phylogenetic trees were constructed using neighbor-joining methods (Mega 5.0) based on <i>pol...
<p>The dashed line indicates the cut-off of 70%. The maximum likelihood phylogenetic trees were cons...
<p>Subjects 171 and 291 were infected with two unrelated HIV-1 variants of subtype C which are shown...
<p>Maximum likelihood phylogenetic trees of PR (A) and RT (B) regions were constructed with referenc...
<p>The viral <i>env</i> sequences were obtained by PCR analysis of plasma samples of 14 HIV-1 infect...
<p>C2-V5 of <i>env</i> nucleotide sequences of the inoculum and transmitted HIV-1 species were align...
<p>One cluster with bootstrap of 99% and genetic distance of ≤ 4.5% is included since it clustered i...
Objective: To estimate the relative substitution rate of the individual positions in an alignment of...
<p>Footnote figure: The phylogenetic inferences were performed by the Neighbor-Joining algorithm und...
<p>The phylogenetic trees were constructed using the Neighbor-Joining method. The bootstrap values o...
<p>Continual lines connected the inter-subtype recombination sequences of <i>pol</i> (left) and <i>e...
<p>A: Phylogenetic tree from concatenated regions assigned as subtype B from the BF1 recombinant iso...
<p>Phylogenetic trees were generated for newly sequenced HIV-1 <i>pol</i> (A) and <i>env</i> (B) gen...
<p>The bootstrap analysis was performed with 1000 replicates. The branches in red represent the reco...
<p>The ML tree was constructed by PhyML 3.0.1 and visualized in FigTree. HIV-1 group N sequence was ...
<p>The phylogenetic trees were constructed using neighbor-joining methods (Mega 5.0) based on <i>pol...
<p>The dashed line indicates the cut-off of 70%. The maximum likelihood phylogenetic trees were cons...
<p>Subjects 171 and 291 were infected with two unrelated HIV-1 variants of subtype C which are shown...
<p>Maximum likelihood phylogenetic trees of PR (A) and RT (B) regions were constructed with referenc...
<p>The viral <i>env</i> sequences were obtained by PCR analysis of plasma samples of 14 HIV-1 infect...
<p>C2-V5 of <i>env</i> nucleotide sequences of the inoculum and transmitted HIV-1 species were align...
<p>One cluster with bootstrap of 99% and genetic distance of ≤ 4.5% is included since it clustered i...
Objective: To estimate the relative substitution rate of the individual positions in an alignment of...
<p>Footnote figure: The phylogenetic inferences were performed by the Neighbor-Joining algorithm und...
<p>The phylogenetic trees were constructed using the Neighbor-Joining method. The bootstrap values o...
<p>Continual lines connected the inter-subtype recombination sequences of <i>pol</i> (left) and <i>e...
<p>A: Phylogenetic tree from concatenated regions assigned as subtype B from the BF1 recombinant iso...