Sequence alignment and haplotype assignments.

<p>Haplotype assignments refer to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0018728#pone-0018728-g003" target="_blank">Figure 3</a>. Numbers refer to position in Genbank reference sequence NC_002784.1. A point (.) refers to the same base as the reference sequence. Abbreviations are: REF – reference sequence, AU – Australian farmed, NZ – New Zealand farmed, KI – King Island Emu, COI – cytochrome <i>c</i> oxidase subunit I.