Summary table of second-step analysis for transmission of multiple HIV-1 variants in five subjects.

<p>The table includes the following sections: study subjects with corresponding Fiebig stage and time of sampling in days p/s; cumulative results of distribution of pairwise distances based on six analyses per gene (ML-corrected distances, K2P-corrected distances, Hamming distances, ML-corrected distances to MRCA, K2P-corrected distances to consensus sequence, and Hamming distances to consensus sequence); analysis of highlighter plots; cumulative results of recombination analysis; tMRCA; number of methods suggesting transmission of single and multiple viral variants; and conclusion regarding multiplicity of HIV-1 transmission. Numeric coding: 0 – transmission of single viral variant; 1 – undetermined; 2 – transmission of multiple viral variants. Numeric coding of “1” and “2” are further enhanced by blue and light red colors.