Phylogenetic analysis using Maximum parsimony Method.

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: theoretical bounds and empirical performance

Guohua Jin
Luay Nakhleh
Sagi Snir
Tamir Tuller

January 2007

Phylogenies play a major role in representing the interrelationships among biological entities. Many...

Phylogenetic relationships of Leishmania species based on trypanosomatid barcode (SSU rDNA) and gGAPDH genes: taxonomic revision of Leishmania (L.) infantum chagasi in South America

Marcili, Arlei
Sperança, Marcia Aparecida
Costa, Andréa Pereira da
Madeira, Maria de F.
Soares, Herbert Sousa
Sanches, Camila de Oliveira Campos Camargo
Acosta, Igor da Cunha Lima
Girotto, Aline
Minervino, Antonio Humberto Hamad
Horta, Maurício C.
Shaw, Jeffrey Jon
Gennari, Solange Maria

January 2014

Phylogenetic studies on trypanosomatid barcode using V7V8 SSU rRNA and gGAPDH gene sequences have pr...

A Maximum Likelihood consensus tree comparing 339 bp ITS1 L. major fragments from Zagora province [MH932563-MH932572] with other L. major strains and Old World Leishmania spp.

Adil El Hamouchi (4907278)
Othmane Daoui (6570032)
Mouad Ait Kbaich (4907269)
Idris Mhaidi (4907281)
Sofia El Kacem (4962574)
Ikram Guizani (564611)
M’hammed Sarih (479591)
Meryem Lemrani (473338)

April 2019

The number of bootstrap replicates are 1000 and branches corresponding to less than 80% bootstrap re...

Phylogenetic analysis using Neighbor-joining Method.

Mohammed A. K. Mahdy (348145)
Hesham M. Al-Mekhlafi (301605)
Abdulsalam M. Al-Mekhlafi (361625)
Yvonne A. L. Lim (148267)
Naemah O. M. Bin Shuaib (361626)
Ahmed A. Azazy (361628)
Rohela Mahmud (185109)

February 2013

Neighbor-joining (NJ) tree displaying the relationships of 2 sequences (GU561643, GU561644) repre...

Phylogenetic analysis by ML method of Leishmania strain CM1 using RNA Pol II sequences.

Thatawan Pothirat (669577)
Adisak Tantiworawit (669578)
Romanee Chaiwarith (427726)
Narissara Jariyapan (530775)
Anchalee Wannasan (669579)
Padet Siriyasatien (669580)
Khuanchai Supparatpinyo (143764)
Michelle D. Bates (361880)
Godwin Kwakye-Nuako (669581)
Paul A. Bates (126749)

December 2014

Tree with 25 species of Leishmania and Endotrypanum monterogeii using Trypanosom...

Maximum likelihood phylogenetic tree based on Leishmania ITS1 sequences showing the relationships of the sequences of L. tropica and L. infantum.

Idris Mhaidi (4907281)
Sofia El Kacem (4962574)
Mouad Ait Kbaich (4907269)
Adil El Hamouchi (4907278)
M’hammed Sarih (479591)
Khadija Akarid (4907272)
Meryem Lemrani (473338)

March 2018

Maximum likelihood phylogenetic tree based on Leishmania ITS1 sequences showing the relati...

Phylogenetic analysis of cytochrome b gene sequences among Leishmania species.

Mariwan M. M. Al-Bajalan (4903372)
Sirwan M. A. Al-Jaf (4903381)
Sherko S. Niranji (4903378)
Dler R. Abdulkareem (4903375)
Khudhair K. Al-Kayali (4903384)
Hirotomo Kato (65934)

March 2018

The scale bar represents 0.01% divergence. Bootstrap values are shown above or below branches. Un...

Phylogenetic tree of ITS1 gene sequences among species.

Chukwunonso O. Nzelu (586994)
Hirotomo Kato (65934)
Naiki Puplampu (586995)
Kwame Desewu (586996)
Shirley Odoom (586997)
Michael D. Wilson (80451)
Tatsuya Sakurai (141921)
Ken Katakura (141924)
Daniel A. Boakye (90294)

February 2014

Leishmania ITS1 gene was amplified within Leishmania DNA positive S. ingrami...

Phylogenetic relationship of Leishmania (Viannia) inferred from concatenated sequences of G6PD, 6PGD, MPI, ICD fragments.

Mariana C. Boité (123789)
Isabel L. Mauricio (123791)
Michael A. Miles (43726)
Elisa Cupolillo (123796)

November 2012

The phylogenetic tree was constructed using number of differences and the NJ method. Only DSTs co...

Single most parsimonious tree obtained from a parsimony analysis of ITS DNA sequence data.

Juliana O. Augustin (500119)
Johannes Z. Groenewald (500120)
Robson J. Nascimento (500121)
Eduardo S. G. Mizubuti (500122)
Robert W. Barreto (339463)
Simon L. Elliot (324218)
Harry C. Evans (324215)

December 2013

The Escovopsis and Escovopsioides clades are highlighted in shaded boxes. In these ...

Maximum-parsimony tree constructed from the concatenated sequences of seven nuclear genes (chs2-drk1-fads-pyrF-tub1-arf6-its2).

Elizabeth M. Brown (393674)
Lisa R. McTaggart (393675)
Sean X. Zhang (393676)
Donald E. Low (130661)
David A. Stevens (337310)
Susan E. Richardson (393677)

March 2013

A majority consensus mid-point rooted maximum parsimony (MP) tree was constructed based on the co...

Phylogenetic and Evolutionary Analysis of Chinese Leishmania Isolates Based on Multilocus Sequence Typing

Chun-ying Zhang
Xiao-jun Lu
Xiao-qing Du
Jun Jian
Ling Shu
Ying Ma

August 2016

Leishmaniasis is a debilitating infectious disease that has a variety of clinical forms. In China, v...

Phylogenomic analyses of L. turanica strains.

Tatiana S. Novozhilova (11886276)
Daniil S. Chistyakov (14725447)
Lyudmila V. Akhmadishina (14725450)
Alexander N. Lukashev (14725453)
Evgeny S. Gerasimov (5317949)
Vyacheslav Yurchenko (789787)

March 2023

(A) Maximum-likelihood phylogenomic tree of the investigated strains. Leishmania major is used as an...

Phylogenetic tree of cyt b gene sequences among species.

Hirotomo Kato (65934)
Abdon E. Bone (3169260)
Tatsuyuki Mimori (3154503)
Kazue Hashiguchi (3169263)
Gonzalo F. Shiguango (3169272)
Silvio V. Gonzales (3169275)
Lenin N. Velez (3169266)
Angel G. Guevara (3169269)
Eduardo A. Gomez (3154500)
Yoshihisa Hashiguchi (843725)

May 2016

Leishmanial cyt b genes were amplified and sequenced from flagellates-positive sand flies,...

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance

Guohua Jin
Luay Nakhleh
Sagi Snir
Tamir Tuller

January 2007

Phylogenies play a major role in representing the interrelationships among biological entities. Many...

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: theoretical bounds and empirical performance

Guohua Jin
Luay Nakhleh
Sagi Snir
Tamir Tuller

January 2007

Phylogenies play a major role in representing the interrelationships among biological entities. Many...

Phylogenetic relationships of Leishmania species based on trypanosomatid barcode (SSU rDNA) and gGAPDH genes: taxonomic revision of Leishmania (L.) infantum chagasi in South America

Marcili, Arlei
Sperança, Marcia Aparecida
Costa, Andréa Pereira da
Madeira, Maria de F.
Soares, Herbert Sousa
Sanches, Camila de Oliveira Campos Camargo
Acosta, Igor da Cunha Lima
Girotto, Aline
Minervino, Antonio Humberto Hamad
Horta, Maurício C.
Shaw, Jeffrey Jon
Gennari, Solange Maria

January 2014

Phylogenetic studies on trypanosomatid barcode using V7V8 SSU rRNA and gGAPDH gene sequences have pr...

A Maximum Likelihood consensus tree comparing 339 bp ITS1 L. major fragments from Zagora province [MH932563-MH932572] with other L. major strains and Old World Leishmania spp.

Adil El Hamouchi (4907278)
Othmane Daoui (6570032)
Mouad Ait Kbaich (4907269)
Idris Mhaidi (4907281)
Sofia El Kacem (4962574)
Ikram Guizani (564611)
M’hammed Sarih (479591)
Meryem Lemrani (473338)

April 2019

The number of bootstrap replicates are 1000 and branches corresponding to less than 80% bootstrap re...

Phylogenetic analysis using Neighbor-joining Method.

Mohammed A. K. Mahdy (348145)
Hesham M. Al-Mekhlafi (301605)
Abdulsalam M. Al-Mekhlafi (361625)
Yvonne A. L. Lim (148267)
Naemah O. M. Bin Shuaib (361626)
Ahmed A. Azazy (361628)
Rohela Mahmud (185109)

February 2013

Neighbor-joining (NJ) tree displaying the relationships of 2 sequences (GU561643, GU561644) repre...

Phylogenetic analysis by ML method of Leishmania strain CM1 using RNA Pol II sequences.

Thatawan Pothirat (669577)
Adisak Tantiworawit (669578)
Romanee Chaiwarith (427726)
Narissara Jariyapan (530775)
Anchalee Wannasan (669579)
Padet Siriyasatien (669580)
Khuanchai Supparatpinyo (143764)
Michelle D. Bates (361880)
Godwin Kwakye-Nuako (669581)
Paul A. Bates (126749)

December 2014

Tree with 25 species of Leishmania and Endotrypanum monterogeii using Trypanosom...

Maximum likelihood phylogenetic tree based on Leishmania ITS1 sequences showing the relationships of the sequences of L. tropica and L. infantum.

Idris Mhaidi (4907281)
Sofia El Kacem (4962574)
Mouad Ait Kbaich (4907269)
Adil El Hamouchi (4907278)
M’hammed Sarih (479591)
Khadija Akarid (4907272)
Meryem Lemrani (473338)

March 2018

Maximum likelihood phylogenetic tree based on Leishmania ITS1 sequences showing the relati...

Phylogenetic analysis of cytochrome b gene sequences among Leishmania species.

Mariwan M. M. Al-Bajalan (4903372)
Sirwan M. A. Al-Jaf (4903381)
Sherko S. Niranji (4903378)
Dler R. Abdulkareem (4903375)
Khudhair K. Al-Kayali (4903384)
Hirotomo Kato (65934)

March 2018

The scale bar represents 0.01% divergence. Bootstrap values are shown above or below branches. Un...

Phylogenetic tree of ITS1 gene sequences among species.

Chukwunonso O. Nzelu (586994)
Hirotomo Kato (65934)
Naiki Puplampu (586995)
Kwame Desewu (586996)
Shirley Odoom (586997)
Michael D. Wilson (80451)
Tatsuya Sakurai (141921)
Ken Katakura (141924)
Daniel A. Boakye (90294)

February 2014

Leishmania ITS1 gene was amplified within Leishmania DNA positive S. ingrami...

Phylogenetic relationship of Leishmania (Viannia) inferred from concatenated sequences of G6PD, 6PGD, MPI, ICD fragments.

Mariana C. Boité (123789)
Isabel L. Mauricio (123791)
Michael A. Miles (43726)
Elisa Cupolillo (123796)

November 2012

The phylogenetic tree was constructed using number of differences and the NJ method. Only DSTs co...

Single most parsimonious tree obtained from a parsimony analysis of ITS DNA sequence data.

Juliana O. Augustin (500119)
Johannes Z. Groenewald (500120)
Robson J. Nascimento (500121)
Eduardo S. G. Mizubuti (500122)
Robert W. Barreto (339463)
Simon L. Elliot (324218)
Harry C. Evans (324215)

December 2013

The Escovopsis and Escovopsioides clades are highlighted in shaded boxes. In these ...

Maximum-parsimony tree constructed from the concatenated sequences of seven nuclear genes (chs2-drk1-fads-pyrF-tub1-arf6-its2).

Elizabeth M. Brown (393674)
Lisa R. McTaggart (393675)
Sean X. Zhang (393676)
Donald E. Low (130661)
David A. Stevens (337310)
Susan E. Richardson (393677)

March 2013

A majority consensus mid-point rooted maximum parsimony (MP) tree was constructed based on the co...

Phylogenetic and Evolutionary Analysis of Chinese Leishmania Isolates Based on Multilocus Sequence Typing

Chun-ying Zhang
Xiao-jun Lu
Xiao-qing Du
Jun Jian
Ling Shu
Ying Ma

August 2016

Leishmaniasis is a debilitating infectious disease that has a variety of clinical forms. In China, v...

Phylogenomic analyses of L. turanica strains.

Tatiana S. Novozhilova (11886276)
Daniil S. Chistyakov (14725447)
Lyudmila V. Akhmadishina (14725450)
Alexander N. Lukashev (14725453)
Evgeny S. Gerasimov (5317949)
Vyacheslav Yurchenko (789787)

March 2023

(A) Maximum-likelihood phylogenomic tree of the investigated strains. Leishmania major is used as an...

Phylogenetic tree of cyt b gene sequences among species.

Hirotomo Kato (65934)
Abdon E. Bone (3169260)
Tatsuyuki Mimori (3154503)
Kazue Hashiguchi (3169263)
Gonzalo F. Shiguango (3169272)
Silvio V. Gonzales (3169275)
Lenin N. Velez (3169266)
Angel G. Guevara (3169269)
Eduardo A. Gomez (3154500)
Yoshihisa Hashiguchi (843725)

May 2016

Leishmanial cyt b genes were amplified and sequenced from flagellates-positive sand flies,...

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance

Guohua Jin
Luay Nakhleh
Sagi Snir
Tamir Tuller

January 2007

Phylogenies play a major role in representing the interrelationships among biological entities. Many...

A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: theoretical bounds and empirical performance

Guohua Jin
Luay Nakhleh
Sagi Snir
Tamir Tuller

January 2007

Phylogenies play a major role in representing the interrelationships among biological entities. Many...

Phylogenetic relationships of Leishmania species based on trypanosomatid barcode (SSU rDNA) and gGAPDH genes: taxonomic revision of Leishmania (L.) infantum chagasi in South America

Marcili, Arlei
Sperança, Marcia Aparecida
Costa, Andréa Pereira da
Madeira, Maria de F.
Soares, Herbert Sousa
Sanches, Camila de Oliveira Campos Camargo
Acosta, Igor da Cunha Lima
Girotto, Aline
Minervino, Antonio Humberto Hamad
Horta, Maurício C.
Shaw, Jeffrey Jon
Gennari, Solange Maria

January 2014

Phylogenetic studies on trypanosomatid barcode using V7V8 SSU rRNA and gGAPDH gene sequences have pr...

A Maximum Likelihood consensus tree comparing 339 bp ITS1 L. major fragments from Zagora province [MH932563-MH932572] with other L. major strains and Old World Leishmania spp.

Adil El Hamouchi (4907278)
Othmane Daoui (6570032)
Mouad Ait Kbaich (4907269)
Idris Mhaidi (4907281)
Sofia El Kacem (4962574)
Ikram Guizani (564611)
M’hammed Sarih (479591)
Meryem Lemrani (473338)

April 2019

The number of bootstrap replicates are 1000 and branches corresponding to less than 80% bootstrap re...

Phylogenetic analysis using Maximum parsimony Method.

Abstract

Extracted data

Phylogenetic analysis using Maximum parsimony Method.

Abstract

Extracted data

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