<p>Algorithm 1 Gillespie Stochastic Simulation Algorithm <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0051174#pone.0051174-Gillespie1" target="_blank">[38]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0051174#pone.0051174-Gillespie2" target="_blank">[39]</a>.</p
Numerical simulation is used more and more frequently in the analysis of physical phenomena. A simul...
<p>Stochastic version of the model (see scheme in <a href="http://www.plosone.org/article/info:doi/1...
Stochastic simulations are one of the cornerstones of the analysis of dynamical processes on complex...
<p><b>(A)</b> Steady state distributions of X (total protein) are plotted at <i>J</i><sub><i>0</i></...
In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (...
<p>Histograms of the intervals between consecutive occurrences of processes in two stochastic simula...
<p>(<b>a</b>–<b>c</b>) Numerical integration of Eq (<a href="http://www.plosbiology.org/article/info...
The deterministic dynamics of populations in continuous time are traditionally described using coupl...
In these lecture notes we will work through three different computational problems from different ap...
Sampling-based computational methods have become a fundamental part of the numerical toolset of prac...
Stochastic simulation algorithm with continuous and dis-continuous time-dependent reaction rates We ...
Many multiagent dynamics, including various collective dynamics occurring on networks, can be modele...
This short note intends to clarify about the applicability of the Stochastic Simulation Algorithm pr...
Generalized Gillespie stochastic simulation algorithm and chemical master equation using timing mach...
Description GillespieSSA provides a simple to use, intuitive, and extensible interface to several st...
Numerical simulation is used more and more frequently in the analysis of physical phenomena. A simul...
<p>Stochastic version of the model (see scheme in <a href="http://www.plosone.org/article/info:doi/1...
Stochastic simulations are one of the cornerstones of the analysis of dynamical processes on complex...
<p><b>(A)</b> Steady state distributions of X (total protein) are plotted at <i>J</i><sub><i>0</i></...
In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (...
<p>Histograms of the intervals between consecutive occurrences of processes in two stochastic simula...
<p>(<b>a</b>–<b>c</b>) Numerical integration of Eq (<a href="http://www.plosbiology.org/article/info...
The deterministic dynamics of populations in continuous time are traditionally described using coupl...
In these lecture notes we will work through three different computational problems from different ap...
Sampling-based computational methods have become a fundamental part of the numerical toolset of prac...
Stochastic simulation algorithm with continuous and dis-continuous time-dependent reaction rates We ...
Many multiagent dynamics, including various collective dynamics occurring on networks, can be modele...
This short note intends to clarify about the applicability of the Stochastic Simulation Algorithm pr...
Generalized Gillespie stochastic simulation algorithm and chemical master equation using timing mach...
Description GillespieSSA provides a simple to use, intuitive, and extensible interface to several st...
Numerical simulation is used more and more frequently in the analysis of physical phenomena. A simul...
<p>Stochastic version of the model (see scheme in <a href="http://www.plosone.org/article/info:doi/1...
Stochastic simulations are one of the cornerstones of the analysis of dynamical processes on complex...