Summary of the bioinformatic analyses performed on the amino acid sequences encoded by the transcriptome of the adult stage of Clonorchis sinensis and Opisthorchis viverrini.

Analysis of the genes expressed in Clonorchis sinensis adults using the expressed sequence tag approach

용태순
박순정

January 2003

Clonorchis sinensis is a biliary tract parasite, which infects over 30 million people in China, Kore...

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.

Ying Tong (479487)
Yang Zhang (30734)
Jiaomei Huang (781775)
Shu Xiao (292300)
Yuehuan Zhang (781776)
Jun Li (6494)
Jinhui Chen (36052)
Ziniu Yu (61877)

August 2015

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.</p

Summary statistics of P. olivaceus transcriptome sequencing and assembly.

Lin Huang (288599)
Guiyang Li (416207)
Zhaolan Mo (696760)
Peng Xiao (172430)
Jie Li (15030)
Jie Huang (104235)

February 2015

Summary statistics of P. olivaceus transcriptome sequencing and assembly.</p

Summary of the clustering performance and bioinformatic analyses performed on the nucleotide sequences encoded in the transcriptome of the adult stage of each Clonorchis sinensis and Opisthorchis viverrini.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aSummarized as number of sequences (average sequence length ± standard deviation; minimum and max...

Summary of biological key pathways predicted from amino acid sequences encoded in the transcriptome of the adult stage of each Clonorchis sinensis and Opisthorchis viverrini based on homology to annotated proteins in the Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathways database.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aValues in parentheses are the percentage of the total number of predicted proteins within each K...

Summary of the numbers of unique genes predicted to be expressed by the adult stage of each Clonorchis sinensis and Opisthorchis viverrini based on amino acid sequence similarity to model eukaryotic organisms.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aAll amino acid sequences conceptually translated from ORF-enriched sequence data were searched a...

Summary of transcriptome sequence datasets of Ae. albopictus reproductive tissues.

Kathryn E. Boes (580233)
José M. C. Ribeiro (123592)
Alex Wong (96273)
Laura C. Harrington (115403)
Mariana F. Wolfner (188033)
Laura K. Sirot (227444)

June 2014

Summary of transcriptome sequence datasets of Ae. albopictus reproductive tissues.</p

Comparative transcriptomic analyses between Opisthorchis viverrini and other parasitic trematodes [12], [19]–[22].

Aaron R. Jex (51914)
Neil D. Young (116444)
Jittiyawadee Sripa (116449)
Ross S. Hall (116455)
Jean-Pierre Scheerlinck (116461)
Thewarach Laha (32213)
Banchob Sripa (32216)
Robin B. Gasser (51916)

November 2012

aSequence comparisons made against complete gene sets predicted from genome sequence data.</p

Summary of mixed sex adult L. hesperus transcriptomic sequences.

J. Joe Hull (277003)
Scott M. Geib (172492)
Jeffrey A. Fabrick (5207)
Colin S. Brent (155012)

January 2013

(A) Length distribution of contig sequences. (B) Length distribution of isotig sequences. (C) Num...

Summary of SSRs identified from the Apostichopus japonicus transcriptome.

Huixia Du (178792)
Zhenmin Bao (116689)
Rui Hou (161624)
Shan Wang (120085)
Hailin Su (171432)
Jingjing Yan (178801)
Meilin Tian (178807)
Yan Li (23143)
Wen Wei (111015)
Wei Lu (3580)
Xiaoli Hu (116713)
Shi Wang (116703)
Jingjie Hu (178820)

March 2012

Summary of SSRs identified from the Apostichopus japonicus transcriptome.</p

Summary of analyses done on whole genome sequences involving 1616 genomes in different phyla that exclusively used pacific biosciences and oxford nanopore technology sequencing platforms.

Jerald Conrad Ibal (6368699)
Huy Quang Pham (5622170)
Chang Eon Park (3639517)
Jae-Ho Shin (6768)

February 2019

Summary of analyses done on whole genome sequences involving 1616 genomes in different phyla that ex...

Summary of sequence assembly and annotations of the Taenia pisiformis transcriptome.

Deying Yang (132869)
Yan Fu (110146)
Xuhang Wu (132864)
Yue Xie (132878)
Huaming Nie (132875)
Lin Chen (54305)
Xiang Nong (171953)
Xiaobin Gu (132883)
Shuxian Wang (132885)
Xuerong Peng (132887)
Ning Yan (73416)
Runhui Zhang (132871)
Wanpeng Zheng (132873)
Guangyou Yang (132890)

April 2012

N50 = median length of all non-redundant consensus sequences, mean = average length of all consen...

Comparative genomic analysis between Clonorchis sinensis, Opisthorchis viverrini, other parasitic trematodes and selected eukaryotic (model) organisms.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aAll amino acid sequences conceptually translated from ORF-enriched sequence data were searched a...

Summary of read numbers based on the RNA-Seq data from different tissues of Lonicera macranthoides.

Zexiong Chen (797402)
Ning Tang (138218)
Yuming You (797403)
Jianbin Lan (663932)
Yiqing Liu (570965)
Zhengguo Li (729862)

September 2015

Summary of read numbers based on the RNA-Seq data from different tissues of Lonicera macrantho...

Sequence summary of the transcriptome of H. vitripennis.

Raja Sekhar Nandety (495337)
Shizuo G. Kamita (192776)
Bruce D. Hammock (65754)
Bryce W. Falk (195946)

December 2013

A) Summary of mRNAseq library sequences. Total and unique reads from both sequencing direc...

Analysis of the genes expressed in Clonorchis sinensis adults using the expressed sequence tag approach

용태순
박순정

January 2003

Clonorchis sinensis is a biliary tract parasite, which infects over 30 million people in China, Kore...

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.

Ying Tong (479487)
Yang Zhang (30734)
Jiaomei Huang (781775)
Shu Xiao (292300)
Yuehuan Zhang (781776)
Jun Li (6494)
Jinhui Chen (36052)
Ziniu Yu (61877)

August 2015

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.</p

Summary statistics of P. olivaceus transcriptome sequencing and assembly.

Lin Huang (288599)
Guiyang Li (416207)
Zhaolan Mo (696760)
Peng Xiao (172430)
Jie Li (15030)
Jie Huang (104235)

February 2015

Summary statistics of P. olivaceus transcriptome sequencing and assembly.</p

Summary of the clustering performance and bioinformatic analyses performed on the nucleotide sequences encoded in the transcriptome of the adult stage of each Clonorchis sinensis and Opisthorchis viverrini.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aSummarized as number of sequences (average sequence length ± standard deviation; minimum and max...

Summary of biological key pathways predicted from amino acid sequences encoded in the transcriptome of the adult stage of each Clonorchis sinensis and Opisthorchis viverrini based on homology to annotated proteins in the Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathways database.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aValues in parentheses are the percentage of the total number of predicted proteins within each K...

Summary of the numbers of unique genes predicted to be expressed by the adult stage of each Clonorchis sinensis and Opisthorchis viverrini based on amino acid sequence similarity to model eukaryotic organisms.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aAll amino acid sequences conceptually translated from ORF-enriched sequence data were searched a...

Summary of transcriptome sequence datasets of Ae. albopictus reproductive tissues.

Kathryn E. Boes (580233)
José M. C. Ribeiro (123592)
Alex Wong (96273)
Laura C. Harrington (115403)
Mariana F. Wolfner (188033)
Laura K. Sirot (227444)

June 2014

Summary of transcriptome sequence datasets of Ae. albopictus reproductive tissues.</p

Comparative transcriptomic analyses between Opisthorchis viverrini and other parasitic trematodes [12], [19]–[22].

Aaron R. Jex (51914)
Neil D. Young (116444)
Jittiyawadee Sripa (116449)
Ross S. Hall (116455)
Jean-Pierre Scheerlinck (116461)
Thewarach Laha (32213)
Banchob Sripa (32216)
Robin B. Gasser (51916)

November 2012

aSequence comparisons made against complete gene sets predicted from genome sequence data.</p

Summary of mixed sex adult L. hesperus transcriptomic sequences.

J. Joe Hull (277003)
Scott M. Geib (172492)
Jeffrey A. Fabrick (5207)
Colin S. Brent (155012)

January 2013

(A) Length distribution of contig sequences. (B) Length distribution of isotig sequences. (C) Num...

Summary of SSRs identified from the Apostichopus japonicus transcriptome.

Huixia Du (178792)
Zhenmin Bao (116689)
Rui Hou (161624)
Shan Wang (120085)
Hailin Su (171432)
Jingjing Yan (178801)
Meilin Tian (178807)
Yan Li (23143)
Wen Wei (111015)
Wei Lu (3580)
Xiaoli Hu (116713)
Shi Wang (116703)
Jingjie Hu (178820)

March 2012

Summary of SSRs identified from the Apostichopus japonicus transcriptome.</p

Summary of analyses done on whole genome sequences involving 1616 genomes in different phyla that exclusively used pacific biosciences and oxford nanopore technology sequencing platforms.

Jerald Conrad Ibal (6368699)
Huy Quang Pham (5622170)
Chang Eon Park (3639517)
Jae-Ho Shin (6768)

February 2019

Summary of analyses done on whole genome sequences involving 1616 genomes in different phyla that ex...

Summary of sequence assembly and annotations of the Taenia pisiformis transcriptome.

Deying Yang (132869)
Yan Fu (110146)
Xuhang Wu (132864)
Yue Xie (132878)
Huaming Nie (132875)
Lin Chen (54305)
Xiang Nong (171953)
Xiaobin Gu (132883)
Shuxian Wang (132885)
Xuerong Peng (132887)
Ning Yan (73416)
Runhui Zhang (132871)
Wanpeng Zheng (132873)
Guangyou Yang (132890)

April 2012

N50 = median length of all non-redundant consensus sequences, mean = average length of all consen...

Comparative genomic analysis between Clonorchis sinensis, Opisthorchis viverrini, other parasitic trematodes and selected eukaryotic (model) organisms.

Neil D. Young (116444)
Bronwyn E. Campbell (208424)
Ross S. Hall (116455)
Aaron R. Jex (51914)
Cinzia Cantacessi (181516)
Thewarach Laha (32213)
Woon-Mok Sohn (363826)
Banchob Sripa (32216)
Alex Loukas (11035)
Paul J. Brindley (35788)
Robin B. Gasser (51916)

February 2013

aAll amino acid sequences conceptually translated from ORF-enriched sequence data were searched a...

Summary of read numbers based on the RNA-Seq data from different tissues of Lonicera macranthoides.

Zexiong Chen (797402)
Ning Tang (138218)
Yuming You (797403)
Jianbin Lan (663932)
Yiqing Liu (570965)
Zhengguo Li (729862)

September 2015

Summary of read numbers based on the RNA-Seq data from different tissues of Lonicera macrantho...

Sequence summary of the transcriptome of H. vitripennis.

Raja Sekhar Nandety (495337)
Shizuo G. Kamita (192776)
Bruce D. Hammock (65754)
Bryce W. Falk (195946)

December 2013

A) Summary of mRNAseq library sequences. Total and unique reads from both sequencing direc...

Analysis of the genes expressed in Clonorchis sinensis adults using the expressed sequence tag approach

용태순
박순정

January 2003

Clonorchis sinensis is a biliary tract parasite, which infects over 30 million people in China, Kore...

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.

Ying Tong (479487)
Yang Zhang (30734)
Jiaomei Huang (781775)
Shu Xiao (292300)
Yuehuan Zhang (781776)
Jun Li (6494)
Jinhui Chen (36052)
Ziniu Yu (61877)

August 2015

Summary statistics of the transcriptome assembly for Crassostrea hongkongensis.</p

Summary statistics of P. olivaceus transcriptome sequencing and assembly.

Lin Huang (288599)
Guiyang Li (416207)
Zhaolan Mo (696760)
Peng Xiao (172430)
Jie Li (15030)
Jie Huang (104235)

February 2015

Summary statistics of P. olivaceus transcriptome sequencing and assembly.</p

Summary of the bioinformatic analyses performed on the amino acid sequences encoded by the transcriptome of the adult stage of <i>Clonorchis sinensis</i> and <i>Opisthorchis viverrini</i>.

Abstract

Extracted data

Summary of the bioinformatic analyses performed on the amino acid sequences encoded by the transcriptome of the adult stage of <i>Clonorchis sinensis</i> and <i>Opisthorchis viverrini</i>.

Abstract

Extracted data

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