Additional file 3: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Additional file 10: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Intragenic number of observed and expected numbers of SNPs in the ST217 isolates. All the genes in t...

Additional file 1: Figure S1. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

BLAST Ring Image of the complete genome sequence of a non-serotypeable and serotype 1 isolate. This ...

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes.

Chewapreecha, Claire
Marttinen, Pekka
Croucher, Nicholas J
Salter, Susannah
Harris, Simon R
Mather, Alison
Hanage, William P
Goldblatt, David
Nosten, Francois H
Turner, Claudia
Turner, Paul
Bentley, Stephen
Parkhill, Julian

August 2014

Traditional genetic association studies are very difficult in bacteria, as the generally limited rec...

Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Hassan Jindal (4858885)
Babu Ramanathan (2805598)
Cheng Le (4858882)
Ranganath Gudimella (741797)
Rozaimi Razali (553806)
Rishya Manikam (292939)
Shamala Sekaran (3853327)

February 2018

Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb

Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Jindal, Hassan Mahmood
Ramanathan, Babu
Le, Cheng Foh
Gudimella, Ranganath
Razali, Rozaimi
Manikam, Rishya
Sekaran, Shamala Devi

January 2018

Background: Streptococcus pneumoniae or pneumococcus is a leading cause of morbidity and mortality w...

Genetic analysis of pbp2x in clinical Streptococcus pneumoniae

Isolates In Quebec
Karl Weiss
Michel Roger

July 2015

Objectives: To investigate the nature of the amino acid motifs found in penicillin-binding protein (...

Molecular analysis of pbp2b in Streptococcus pneumonia isolated from clinical and normal flora samples

Sadeghi, J.
Ahamadi, A.
Douraghi, M.
Pourshafie, M.R.
Talebi, M.

January 2015

Streptococcus pneumoniae is an important bacterial pathogen responsible for respiratory infections, ...

Genotypic characterization of Malaysian human isolates of Streptococcus pneumoniae from carriage and clinical sources

Mohamed Shakrina, Nik Noorul Shakira
Masri, Siti Norbaya
Mohd Taib, Niazlin
Amin Nordin, Syafinaz
Jamal, Farida
Mohd Desa, Mohd Nasir

December 2014

This study characterized carriage and clinical pneumococcal isolates for serotypes, penicillin susce...

Molecular characterisation of penicillin-resistant isolates of Streptococcus pneumoniae in Christchurch, New Zealand

Bean, David

January 2002

Streptococcus pneumoniae is an important cause of morbidity and mortality worldwide. Acquisition of ...

Additional file 2: of Clonal diversity and genetic profiling of antibiotic resistance among multidrug/carbapenem-resistant Klebsiella pneumoniae isolates from a tertiary care hospital in Saudi Arabia

Taher Zaman (5173748)
Maha Alrodayyan (5173742)
Maha Albladi (5173745)
Mohammed Aldrees (5173739)
Mohammed Siddique (5173751)
Sameera Aljohani (5173754)
Hanan Balkhy (3484613)

May 2018

Clonal diversity analysis. Genetic diversity analysis at the nucleotide level across the seven multi...

Molecular characterization of penicillin non-susceptible Streptococcus pneumoniae in Christchurch, New Zealand

David C. Bean
Rosemary B. Ikram
John D. Klena

July 2015

Objectives: To determine the epidemiological relationship between non-invasive penicillin non-suscep...

Genetic diversity of penicillin-binding protein 2B- and 2X-genes from Streptococcus pneumoniae in South Africa

Anthony M. Smith
Keith P. Klugman
Tracey J. Coffey
Brian G. Spratt

January 1992

Streptococcus pneumoniae (the pneumococcus) is believed to have developed resistance to penicillin b...

Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance.

Simoes, A.S.
Sa-Leao, R.
Eleveld, M.J.
Tavares, D.A.
Carrico, J.A.
Bootsma, H.J.
Hermans, P.W.M.

January 2010

Contains fulltext : 88330.pdf (publisher's version ) (Open Access)While performing...

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

Claire Chewapreecha (137268)
Pekka Marttinen (119077)
Nicholas J. Croucher (158423)
Susannah J. Salter (466583)
Simon R. Harris (124597)
Alison E. Mather (338957)
William P. Hanage (249299)
David Goldblatt (160742)
Francois H. Nosten (5660191)
Claudia Turner (160713)
Paul Turner (160711)
Stephen D. Bentley (137281)
Julian Parkhill (30393)

August 2014

<div><p>Traditional genetic association studies are very difficult in bacteria, as the generally lim...

CONCISE COMMUNICATION Multilocus Sequence Typing of Streptococcus pneumoniae Clones with Unusual Drug Resistance Patterns: Genetic Backgrounds and Relatedness to Other Epidemic Clones

Er Tomasz
Hermı́nia De Lencastre

January 1206

Six drug-resistant Streptococcus pneumoniae clones were previously identified from day care centers ...

Additional file 10: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Intragenic number of observed and expected numbers of SNPs in the ST217 isolates. All the genes in t...

Additional file 1: Figure S1. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

BLAST Ring Image of the complete genome sequence of a non-serotypeable and serotype 1 isolate. This ...

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes.

Chewapreecha, Claire
Marttinen, Pekka
Croucher, Nicholas J
Salter, Susannah
Harris, Simon R
Mather, Alison
Hanage, William P
Goldblatt, David
Nosten, Francois H
Turner, Claudia
Turner, Paul
Bentley, Stephen
Parkhill, Julian

August 2014

Traditional genetic association studies are very difficult in bacteria, as the generally limited rec...

Additional file 1: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Hassan Jindal (4858885)
Babu Ramanathan (2805598)
Cheng Le (4858882)
Ranganath Gudimella (741797)
Rozaimi Razali (553806)
Rishya Manikam (292939)
Shamala Sekaran (3853327)

February 2018

Assembly and gene content of all the ten pneumococcal clinical isolates. (XLSX 288Â kb

Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Jindal, Hassan Mahmood
Ramanathan, Babu
Le, Cheng Foh
Gudimella, Ranganath
Razali, Rozaimi
Manikam, Rishya
Sekaran, Shamala Devi

January 2018

Background: Streptococcus pneumoniae or pneumococcus is a leading cause of morbidity and mortality w...

Genetic analysis of pbp2x in clinical Streptococcus pneumoniae

Isolates In Quebec
Karl Weiss
Michel Roger

July 2015

Objectives: To investigate the nature of the amino acid motifs found in penicillin-binding protein (...

Molecular analysis of pbp2b in Streptococcus pneumonia isolated from clinical and normal flora samples

Sadeghi, J.
Ahamadi, A.
Douraghi, M.
Pourshafie, M.R.
Talebi, M.

January 2015

Streptococcus pneumoniae is an important bacterial pathogen responsible for respiratory infections, ...

Genotypic characterization of Malaysian human isolates of Streptococcus pneumoniae from carriage and clinical sources

Mohamed Shakrina, Nik Noorul Shakira
Masri, Siti Norbaya
Mohd Taib, Niazlin
Amin Nordin, Syafinaz
Jamal, Farida
Mohd Desa, Mohd Nasir

December 2014

This study characterized carriage and clinical pneumococcal isolates for serotypes, penicillin susce...

Molecular characterisation of penicillin-resistant isolates of Streptococcus pneumoniae in Christchurch, New Zealand

Bean, David

January 2002

Streptococcus pneumoniae is an important cause of morbidity and mortality worldwide. Acquisition of ...

Additional file 2: of Clonal diversity and genetic profiling of antibiotic resistance among multidrug/carbapenem-resistant Klebsiella pneumoniae isolates from a tertiary care hospital in Saudi Arabia

Taher Zaman (5173748)
Maha Alrodayyan (5173742)
Maha Albladi (5173745)
Mohammed Aldrees (5173739)
Mohammed Siddique (5173751)
Sameera Aljohani (5173754)
Hanan Balkhy (3484613)

May 2018

Clonal diversity analysis. Genetic diversity analysis at the nucleotide level across the seven multi...

Molecular characterization of penicillin non-susceptible Streptococcus pneumoniae in Christchurch, New Zealand

David C. Bean
Rosemary B. Ikram
John D. Klena

July 2015

Objectives: To determine the epidemiological relationship between non-invasive penicillin non-suscep...

Genetic diversity of penicillin-binding protein 2B- and 2X-genes from Streptococcus pneumoniae in South Africa

Anthony M. Smith
Keith P. Klugman
Tracey J. Coffey
Brian G. Spratt

January 1992

Streptococcus pneumoniae (the pneumococcus) is believed to have developed resistance to penicillin b...

Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance.

Simoes, A.S.
Sa-Leao, R.
Eleveld, M.J.
Tavares, D.A.
Carrico, J.A.
Bootsma, H.J.
Hermans, P.W.M.

January 2010

Contains fulltext : 88330.pdf (publisher's version ) (Open Access)While performing...

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

Claire Chewapreecha (137268)
Pekka Marttinen (119077)
Nicholas J. Croucher (158423)
Susannah J. Salter (466583)
Simon R. Harris (124597)
Alison E. Mather (338957)
William P. Hanage (249299)
David Goldblatt (160742)
Francois H. Nosten (5660191)
Claudia Turner (160713)
Paul Turner (160711)
Stephen D. Bentley (137281)
Julian Parkhill (30393)

August 2014

<div><p>Traditional genetic association studies are very difficult in bacteria, as the generally lim...

CONCISE COMMUNICATION Multilocus Sequence Typing of Streptococcus pneumoniae Clones with Unusual Drug Resistance Patterns: Genetic Backgrounds and Relatedness to Other Epidemic Clones

Er Tomasz
Hermı́nia De Lencastre

January 1206

Six drug-resistant Streptococcus pneumoniae clones were previously identified from day care centers ...

Additional file 10: of Understanding pneumococcal serotype 1 biology through population genomic analysis

Chrispin Chaguza (769328)
Jennifer Cornick (137262)
Simon Harris (137272)
Cheryl Andam (3401711)
Laura Bricio-Moreno (408752)
Marie Yang (552565)
Feyruz Yalcin (36058)
Sani Ousmane (769333)
Shanil Govindpersad (3401708)
Madikay Senghore (769330)
Chinelo Ebruke (126282)
Mignon Du Plessis (3401699)
Anmol Kiran (3401705)
Gerd Pluschke (7855)
Betuel Sigauque (3401702)
Lesley McGee (425092)
Keith Klugman (3401714)
Paul Turner (160711)
Jukka Corander (105139)
Julian Parkhill (30393)
Jean-Marc Collard (176447)
Martin Antonio (42317)
Anne von Gottberg (194681)
Robert Heyderman (3401696)
Neil French (76228)
Aras Kadioglu (153604)
William Hanage (341924)
Dean Everett (355462)
Stephen Bentley (1566)

November 2016

Intragenic number of observed and expected numbers of SNPs in the ST217 isolates. All the genes in t...

Additional file 1: Figure S1. of Two cases of serotypeable and non-serotypeable variants of Streptococcus pneumoniae detected simultaneously during invasive disease

Kedibone Ndlangisa (3497129)
Mignon du Plessis (631320)
Mushal Allam (3497135)
Nicole Wolter (631321)
Thabo Mohale (3497132)
Linda de Gouveia (194686)
Monica Birkhead (307448)
Keith Klugman (3401714)
Anne von Gottberg (194681)

June 2016

BLAST Ring Image of the complete genome sequence of a non-serotypeable and serotype 1 isolate. This ...

Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes.

Chewapreecha, Claire
Marttinen, Pekka
Croucher, Nicholas J
Salter, Susannah
Harris, Simon R
Mather, Alison
Hanage, William P
Goldblatt, David
Nosten, Francois H
Turner, Claudia
Turner, Paul
Bentley, Stephen
Parkhill, Julian

August 2014

Traditional genetic association studies are very difficult in bacteria, as the generally limited rec...

Additional file 3: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Abstract

Extracted data

Additional file 3: of Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing

Abstract

Extracted data

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