Additional file 4: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.

Bailey, Paul C
Schudoma, Christian
Jackson, William
Baggs, Erin
Dagdas, Gulay
Haerty, Wilfried
Moscou, Matthew
Krasileva, Ksenia V

February 2018

BackgroundThe plant immune system is innate and encoded in the germline. Using it efficiently, plant...

Genome-wide identification of cell-surface and intracellular immune receptors in 350 plant species

Bruno Pok Man Ngou
Robert Heal
Michele Wyler
Marc W Schmid
Jonathan DG Jones

August 2022

Here we identified cell-surface (LRR-RLKs, LRR-RLPs, LysM-RLKs and LysM-RLPs) and intracellular immu...

Additional file 15: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

Panagiotis Sarris (3435626)
Volkan Cevik (3435617)
Gulay Dagdas (3435620)
Jonathan Jones (411666)
Ksenia Krasileva (3435623)

February 2016

Visual representation of distribution of WRKY fusions across flowering plants. (PDF 1729 kb

Additional file 14: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

All NLR-IDs found in nine grasses (e-value at relaxed cut-offâ<â0.05), including the genes that ...

Additional file 13: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Bar plot of number of NLRs in each clade and percent of NLRs from each clade that overlap with predi...

Additional file 2: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Clade memberships of all NLRs present in the tree in Fig.Â 1 and corresponding integrated domains pr...

Additional file 15: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

The alignment of NB, ARC1, and ARC2 used to train the HMM for NLR proteins used for phylogenetic ana...

Additional file 3: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Maximum likelihood phylogeny based on the NB-ARC domain of all NLRs and NLR-IDs for each of the nine...

Additional file 11: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Potential donor - NLR acceptor gene sets, as observed from phylogenetic trees of the donor ID genes....

Additional file 12: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

The AP2b/MYB-NLR domain shuffling includes duplication of AP2 gene and inter-chromosomal transfer of...

Additional file 1: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Quality assessment of the gene datasets used for phylogenetic analysis: N50 and size of the correspo...

Additional file 5: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Manual curation of the genomic regions surrounding MIC1 genes in Brachypodium and rice. (A) MIC1 NLR...

Data for: Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4742760)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (3861778)
Ksenia Krasileva (3435623)

January 2018

This Figshare project contains data for paper entitled "Dominant integration locus drives continuous...

Additional file 6: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

Panagiotis Sarris (3435626)
Volkan Cevik (3435617)
Gulay Dagdas (3435620)
Jonathan Jones (411666)
Ksenia Krasileva (3435623)

February 2016

Protein ids and corresponding domains of putative NLR-IDs from all plant species. Table of domain ar...

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul C. Bailey
Christian Schudoma
William Jackson
Erin Baggs
Gulay Dagdas
Wilfried Haerty
Matthew Moscou
Ksenia V. Krasileva

February 2018

Abstract Background The plant immune system is innate and encoded in the germline. Using it efficien...

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.

Bailey, Paul C
Schudoma, Christian
Jackson, William
Baggs, Erin
Dagdas, Gulay
Haerty, Wilfried
Moscou, Matthew
Krasileva, Ksenia V

February 2018

BackgroundThe plant immune system is innate and encoded in the germline. Using it efficiently, plant...

Genome-wide identification of cell-surface and intracellular immune receptors in 350 plant species

Bruno Pok Man Ngou
Robert Heal
Michele Wyler
Marc W Schmid
Jonathan DG Jones

August 2022

Here we identified cell-surface (LRR-RLKs, LRR-RLPs, LysM-RLKs and LysM-RLPs) and intracellular immu...

Additional file 15: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

Panagiotis Sarris (3435626)
Volkan Cevik (3435617)
Gulay Dagdas (3435620)
Jonathan Jones (411666)
Ksenia Krasileva (3435623)

February 2016

Visual representation of distribution of WRKY fusions across flowering plants. (PDF 1729 kb

Additional file 14: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

All NLR-IDs found in nine grasses (e-value at relaxed cut-offâ<â0.05), including the genes that ...

Additional file 13: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Bar plot of number of NLRs in each clade and percent of NLRs from each clade that overlap with predi...

Additional file 2: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Clade memberships of all NLRs present in the tree in Fig.Â 1 and corresponding integrated domains pr...

Additional file 15: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

The alignment of NB, ARC1, and ARC2 used to train the HMM for NLR proteins used for phylogenetic ana...

Additional file 3: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Maximum likelihood phylogeny based on the NB-ARC domain of all NLRs and NLR-IDs for each of the nine...

Additional file 11: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Potential donor - NLR acceptor gene sets, as observed from phylogenetic trees of the donor ID genes....

Additional file 12: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

The AP2b/MYB-NLR domain shuffling includes duplication of AP2 gene and inter-chromosomal transfer of...

Additional file 1: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Quality assessment of the gene datasets used for phylogenetic analysis: N50 and size of the correspo...

Additional file 5: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4864429)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (4822788)
Ksenia Krasileva (3435623)

February 2018

Manual curation of the genomic regions surrounding MIC1 genes in Brachypodium and rice. (A) MIC1 NLR...

Data for: Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul Bailey (4742760)
Christian Schudoma (4746453)
William Jackson (253435)
Erin Baggs (4746450)
Gulay Dagdas (3435620)
Wilfried Haerty (3539540)
Matthew Moscou (3861778)
Ksenia Krasileva (3435623)

January 2018

This Figshare project contains data for paper entitled "Dominant integration locus drives continuous...

Additional file 6: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

Panagiotis Sarris (3435626)
Volkan Cevik (3435617)
Gulay Dagdas (3435620)
Jonathan Jones (411666)
Ksenia Krasileva (3435623)

February 2016

Protein ids and corresponding domains of putative NLR-IDs from all plant species. Table of domain ar...

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Paul C. Bailey
Christian Schudoma
William Jackson
Erin Baggs
Gulay Dagdas
Wilfried Haerty
Matthew Moscou
Ksenia V. Krasileva

February 2018

Abstract Background The plant immune system is innate and encoded in the germline. Using it efficien...

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions.

Bailey, Paul C
Schudoma, Christian
Jackson, William
Baggs, Erin
Dagdas, Gulay
Haerty, Wilfried
Moscou, Matthew
Krasileva, Ksenia V

February 2018

BackgroundThe plant immune system is innate and encoded in the germline. Using it efficiently, plant...

Genome-wide identification of cell-surface and intracellular immune receptors in 350 plant species

Bruno Pok Man Ngou
Robert Heal
Michele Wyler
Marc W Schmid
Jonathan DG Jones

August 2022

Here we identified cell-surface (LRR-RLKs, LRR-RLPs, LysM-RLKs and LysM-RLPs) and intracellular immu...

Additional file 15: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

Panagiotis Sarris (3435626)
Volkan Cevik (3435617)
Gulay Dagdas (3435620)
Jonathan Jones (411666)
Ksenia Krasileva (3435623)

February 2016

Visual representation of distribution of WRKY fusions across flowering plants. (PDF 1729 kb

Additional file 4: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Abstract

Extracted data

Additional file 4: of Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

Abstract

Extracted data

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