A carefully selected set of acyclic and cyclic model peptides and several other macrocycles, comprising 13 compounds in total, has been used to calibrate the accuracy of the DFT(-D3) method for conformational energies, employing BP86, PBE0, PBE, B3LYP, BLYP, TPSS, TPSSh, M06-2X, B97-D, OLYP, revPBE, M06-L, SCAN, revTPSS, BH-LYP, and ωB97X-D3 functionals. Both high- and low-energy conformers, 15 or 16 for each compound adding to 196 in total, denoted as the MPCONF196 data set, were included, and the reference values were obtained by the composite protocol, yielding the CCSD(T)/CBS extrapolated energies or their DLPNO-CCSD(T)/CBS equivalents in the case of larger systems. The latter was shown to be in near-quantitative (∼0.10–0.15 kcal·m...
Abstract In this study we compare the three algorithms for the generation of conformer ensembles Bio...
We establish that routine B3LYP and MP2 methods give qualitatively wrong conformations for flexible ...
Conformational sampling by direct optimization of an all-atom energy function is ineffective and ine...
A carefully selected set of acyclic and cyclic model peptides and several other macrocycles, compris...
To find and calibrate a robust and reliable computational protocol for mapping conformational space ...
Sampling low energy conformations of macrocycles is challenging due to the large size of many of the...
A novel method for exploring macrocycle conformational space, Prime macrocycle conformational sampli...
Macrocycles represent an important class of medicinally relevant small molecules due to their intere...
Macrocycles are of considerable interest as highly specific drug candidates, yet they challenge stan...
We have carried out a large scale computational investigation to assess the utility of common small-...
Small peptides are model molecules for the amino acid residues that are the constituents of proteins...
We assess the performance of a group of exchange-correlation functionals for predicting the secondar...
We present a conformational factorization approach. The theory is based on a superposition partition...
The M06-L density functional has been assessed for its ability to predict the correct structure of a...
We assess the performance of a group of exchange-correlation functionals for predicting the secondar...
Abstract In this study we compare the three algorithms for the generation of conformer ensembles Bio...
We establish that routine B3LYP and MP2 methods give qualitatively wrong conformations for flexible ...
Conformational sampling by direct optimization of an all-atom energy function is ineffective and ine...
A carefully selected set of acyclic and cyclic model peptides and several other macrocycles, compris...
To find and calibrate a robust and reliable computational protocol for mapping conformational space ...
Sampling low energy conformations of macrocycles is challenging due to the large size of many of the...
A novel method for exploring macrocycle conformational space, Prime macrocycle conformational sampli...
Macrocycles represent an important class of medicinally relevant small molecules due to their intere...
Macrocycles are of considerable interest as highly specific drug candidates, yet they challenge stan...
We have carried out a large scale computational investigation to assess the utility of common small-...
Small peptides are model molecules for the amino acid residues that are the constituents of proteins...
We assess the performance of a group of exchange-correlation functionals for predicting the secondar...
We present a conformational factorization approach. The theory is based on a superposition partition...
The M06-L density functional has been assessed for its ability to predict the correct structure of a...
We assess the performance of a group of exchange-correlation functionals for predicting the secondar...
Abstract In this study we compare the three algorithms for the generation of conformer ensembles Bio...
We establish that routine B3LYP and MP2 methods give qualitatively wrong conformations for flexible ...
Conformational sampling by direct optimization of an all-atom energy function is ineffective and ine...