Additional parameters of unidentified, mutable PSMs. (a) Peptide isoelectric point (pI). (b) Peptide charge. (c) Differences in peptide mass. Searches against the Pan database are on the left, those to the Pongo database on the right. Point colour indicates the number of sequence differences between the Homo and Pan/Pongo sequence, respectively. Dashed lines indicate where isoelectric point, charge or peptide sequence mass is identical for homologous sequences. Peptide isoelectric point and charge are calculated at pH = 7. (PNG 586 kb
Figure S1. Comparison of seminal fluid proteins (SFPs) identified with tandem mass spectrometry (MS/...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...
T, the name and additional information is presented (here B1-1 see top box). Those proteins which pa...
The study of ancient protein sequences is increasingly focused on the analysis of older samples, inc...
Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...
Supplementary methods. Descriptions on the human MS/MS data set, RNA sequencing analysis, constructi...
Dataset proteomic analysis of a 45âday organoid. List of identified proteins with the respective a...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
Listing the reference genome peptides identified exclusively by the sample-specific databases. (XLS ...
Peptide (charge 2+) identification results from search against simulated proteogenomic databases for...
Histograms summarizing the occurrences of Pfam-A functional domains in the human (blue) and MTB (red...
Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb
Peptide (charge 3+) identification results from search against simulated proteogenomic databases for...
TABLE (.XLS) including the values of the gene pair-wise Spearman correlation and the cross-validatio...
Tables S5-S12. The seminal fluid peptides identified from each human individual that underwent MS/MS...
Figure S1. Comparison of seminal fluid proteins (SFPs) identified with tandem mass spectrometry (MS/...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...
T, the name and additional information is presented (here B1-1 see top box). Those proteins which pa...
The study of ancient protein sequences is increasingly focused on the analysis of older samples, inc...
Selection reaction monitoring (SRM) peptide transition parameters for protein candidates. Transition...
Supplementary methods. Descriptions on the human MS/MS data set, RNA sequencing analysis, constructi...
Dataset proteomic analysis of a 45âday organoid. List of identified proteins with the respective a...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
Listing the reference genome peptides identified exclusively by the sample-specific databases. (XLS ...
Peptide (charge 2+) identification results from search against simulated proteogenomic databases for...
Histograms summarizing the occurrences of Pfam-A functional domains in the human (blue) and MTB (red...
Proportion of redundant peptides in decoy databases for simulated proteogenomic search. (DOCX 14Â kb
Peptide (charge 3+) identification results from search against simulated proteogenomic databases for...
TABLE (.XLS) including the values of the gene pair-wise Spearman correlation and the cross-validatio...
Tables S5-S12. The seminal fluid peptides identified from each human individual that underwent MS/MS...
Figure S1. Comparison of seminal fluid proteins (SFPs) identified with tandem mass spectrometry (MS/...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...
T, the name and additional information is presented (here B1-1 see top box). Those proteins which pa...