Additional file 5: of Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Additional file 1: of The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p

Zsolt Czimmerer (285768)
Tamas Varga (1482442)
Mate Kiss (3576902)
Cesaré Vázquez (3576884)
Quang Doan-Xuan (3576887)
Dominik Rückerl (528133)
Sudhir Tattikota (3576881)
Xin Yan (17064)
Zsuzsanna Nagy (64689)
Bence Daniel (3576893)
Szilard Poliska (3576899)
Attila Horvath (285787)
Gergely Nagy (1611460)
Eva Varallyay (285776)
Matthew Poy (3576905)
Judith Allen (3576896)
Zsolt Bacso (3576890)
Cei Abreu-Goodger (10072)
Laszlo Nagy (285790)

May 2016

List of qPCR assays and primer sequences for gene expression analysis. (XLSX 11 kb

Additional file 5: of Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection

Guillaume Carissimo (2636878)
Adrien Pain (700727)
Eugeni Belda (160587)
Kenneth Vernick (736310)

July 2018

Figure S3. Venn diagram of A. coluzzii differentially expressed miRNAs during ONNV infection. Mosqui...

Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages.

Suki M Y Lee
Jennifer L Gardy
C Y Cheung
Timothy K W Cheung
Kenrie P Y Hui
Nancy Y Ip
Y Guan
Robert E W Hancock
J S Malik Peiris

December 2009

Human disease caused by highly pathogenic avian influenza (HPAI) H5N1 can lead to a rapidly progress...

Additional file 3: of Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Na Zhang (333280)
Yun-Juan Bao (4886056)
Amy Tong (21210)
Scott Zuyderduyn (4886059)
Gary Bader (3423413)
J. Malik Peiris (4021427)
Si Lok (104113)
Suki Lee (4886062)

February 2018

Differential expression of the genes in response to H5N1 virus infection at 6-h post-infection. (XLS...

Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Na Zhang
Yun-Juan Bao
Amy Hin-Yan Tong
Scott Zuyderduyn
Gary D. Bader
J. S. Malik Peiris
Si Lok
Suki Man-Yan Lee

February 2018

Abstract Background Avian influenza A H5N1 virus can cause lethal disease in humans. The virus can t...

Additional file 2: of Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao (170160)
Kun Zhang (108291)
Lirong Liu (2580958)
Wei Li (7081)
Bin Zhu (182882)
Shuang Zhang (117657)
Ping Xu (122619)
Wenjun Liu (162986)
Jing Li (10611)

February 2019

Table S2. The differential unique genes in the A/QH group relative to biological process. (XLSX 46 k...

Additional file 3: of Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao (170160)
Kun Zhang (108291)
Lirong Liu (2580958)
Wei Li (7081)
Bin Zhu (182882)
Shuang Zhang (117657)
Ping Xu (122619)
Wenjun Liu (162986)
Jing Li (10611)

February 2019

Table S3. The differential unique genes in the A/QH group relative to molecular function. (XLSX 37 k...

Data_Sheet_1_Comparative Analysis of Whole-Transcriptome RNA Expression in MDCK Cells Infected With the H3N2 and H5N1 Canine Influenza Viruses.ZIP

Pan Tao (433171)
Zhangyong Ning (294928)
Xiangqi Hao (4524016)
Xi Lin (212839)
Qingxu Zheng (4524013)
Shoujun Li (572627)

March 2019

This study aimed to detect changes in the complete transcriptome of MDCK cells after infection with ...

Additional file 1: of Influenza A virus infection dysregulates the expression of microRNA-22 and its targets; CD147 and HDAC4, in epithelium of asthmatics

Moheimani, Fatemeh
Koops, Jorinke
Williams, Teresa
Reid, Andrew T.
Hansbro, Philip M.
Wark, Peter A.
Knight, Darryl A.
Faculteit Medische Wetenschappen/UMCG
University of British Columbia

August 2018

Figure S1. Monolayer cultures and generation of ALI-pBEC cultures from non-asthmatics and asthmatics...

Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao
Kun Zhang
Lirong Liu
Wei Li
Bin Zhu
Shuang Zhang
Ping Xu
Wenjun Liu
Jing Li

February 2019

Abstract Background Influenza A virus (IAV) belongs to the Orthomyxoviridae family. IAV causes a hig...

Additional file 9: Table S4. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

Anna Aulicino (110620)
Adam Dinan (3499796)
Aleksandra Miranda-CasoLuengo (3499799)
John Browne (476826)
KĂŠvin Rue-Albrecht (3409397)
David MacHugh (254383)
Brendan Loftus (3417539)

December 2015

Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs wer...

Supplementary materials for "Transcriptomic Characterization Reveals Attributes of High Influenza Virus Productivity in MDCK Cells"

Ye, Qian

September 2021

Supplemental Table S1: The TPM of top 20 most abundant transcripts Supplemental Table S2: The enrich...

MicroRNA regulation of cellular mRNAs during influenza virus infection.

William A. Buggele (463461)
Katherine E. Krause (463462)
Curt M. Horvath (353261)

September 2013

<div><p>(A) A549 cells were mock infected, infected with A/WSN/33 (5 pfu/cell), or infected after tr...

Additional file 5: of Differential responses of innate immunity triggered by different subtypes of influenza a viruses in human and avian hosts

Yingying Cao (4777638)
Yaowei Huang (4777635)
Ke Xu (134879)
Yuanhua Liu (1676797)
Xuan Li (137217)
Ye Xu (29869)
Wu Zhong (2535388)
Pei Hao (27696)

December 2017

Table S6. Top 10 up-regulated differentially expressed genes (DEGs) in ileum and lung of chicken inf...

Additional file 2: of RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

Esther Wilk (150765)
Ashutosh Pandey (634350)
Sarah Leist (3486557)
Bastian Hatesuer (493136)
Matthias Preusse (3548096)
Claudia Pommerenke (150761)
Junxi Wang (3548099)
Klaus Schughart (150782)

September 2015

Supplemental Material. Detailed discussion of known biological functions of genes from TablesÂ 2 and...

Additional file 1: of The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p

Zsolt Czimmerer (285768)
Tamas Varga (1482442)
Mate Kiss (3576902)
Cesaré Vázquez (3576884)
Quang Doan-Xuan (3576887)
Dominik Rückerl (528133)
Sudhir Tattikota (3576881)
Xin Yan (17064)
Zsuzsanna Nagy (64689)
Bence Daniel (3576893)
Szilard Poliska (3576899)
Attila Horvath (285787)
Gergely Nagy (1611460)
Eva Varallyay (285776)
Matthew Poy (3576905)
Judith Allen (3576896)
Zsolt Bacso (3576890)
Cei Abreu-Goodger (10072)
Laszlo Nagy (285790)

May 2016

List of qPCR assays and primer sequences for gene expression analysis. (XLSX 11 kb

Additional file 5: of Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection

Guillaume Carissimo (2636878)
Adrien Pain (700727)
Eugeni Belda (160587)
Kenneth Vernick (736310)

July 2018

Figure S3. Venn diagram of A. coluzzii differentially expressed miRNAs during ONNV infection. Mosqui...

Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages.

Suki M Y Lee
Jennifer L Gardy
C Y Cheung
Timothy K W Cheung
Kenrie P Y Hui
Nancy Y Ip
Y Guan
Robert E W Hancock
J S Malik Peiris

December 2009

Human disease caused by highly pathogenic avian influenza (HPAI) H5N1 can lead to a rapidly progress...

Additional file 3: of Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Na Zhang (333280)
Yun-Juan Bao (4886056)
Amy Tong (21210)
Scott Zuyderduyn (4886059)
Gary Bader (3423413)
J. Malik Peiris (4021427)
Si Lok (104113)
Suki Lee (4886062)

February 2018

Differential expression of the genes in response to H5N1 virus infection at 6-h post-infection. (XLS...

Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Na Zhang
Yun-Juan Bao
Amy Hin-Yan Tong
Scott Zuyderduyn
Gary D. Bader
J. S. Malik Peiris
Si Lok
Suki Man-Yan Lee

February 2018

Abstract Background Avian influenza A H5N1 virus can cause lethal disease in humans. The virus can t...

Additional file 2: of Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao (170160)
Kun Zhang (108291)
Lirong Liu (2580958)
Wei Li (7081)
Bin Zhu (182882)
Shuang Zhang (117657)
Ping Xu (122619)
Wenjun Liu (162986)
Jing Li (10611)

February 2019

Table S2. The differential unique genes in the A/QH group relative to biological process. (XLSX 46 k...

Additional file 3: of Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao (170160)
Kun Zhang (108291)
Lirong Liu (2580958)
Wei Li (7081)
Bin Zhu (182882)
Shuang Zhang (117657)
Ping Xu (122619)
Wenjun Liu (162986)
Jing Li (10611)

February 2019

Table S3. The differential unique genes in the A/QH group relative to molecular function. (XLSX 37 k...

Data_Sheet_1_Comparative Analysis of Whole-Transcriptome RNA Expression in MDCK Cells Infected With the H3N2 and H5N1 Canine Influenza Viruses.ZIP

Pan Tao (433171)
Zhangyong Ning (294928)
Xiangqi Hao (4524016)
Xi Lin (212839)
Qingxu Zheng (4524013)
Shoujun Li (572627)

March 2019

This study aimed to detect changes in the complete transcriptome of MDCK cells after infection with ...

Additional file 1: of Influenza A virus infection dysregulates the expression of microRNA-22 and its targets; CD147 and HDAC4, in epithelium of asthmatics

Moheimani, Fatemeh
Koops, Jorinke
Williams, Teresa
Reid, Andrew T.
Hansbro, Philip M.
Wark, Peter A.
Knight, Darryl A.
Faculteit Medische Wetenschappen/UMCG
University of British Columbia

August 2018

Figure S1. Monolayer cultures and generation of ALI-pBEC cultures from non-asthmatics and asthmatics...

Global transcriptome analysis of H5N1 influenza virus-infected human cells

Ying Cao
Kun Zhang
Lirong Liu
Wei Li
Bin Zhu
Shuang Zhang
Ping Xu
Wenjun Liu
Jing Li

February 2019

Abstract Background Influenza A virus (IAV) belongs to the Orthomyxoviridae family. IAV causes a hig...

Additional file 9: Table S4. of High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

Anna Aulicino (110620)
Adam Dinan (3499796)
Aleksandra Miranda-CasoLuengo (3499799)
John Browne (476826)
KĂŠvin Rue-Albrecht (3409397)
David MacHugh (254383)
Brendan Loftus (3417539)

December 2015

Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs wer...

Supplementary materials for "Transcriptomic Characterization Reveals Attributes of High Influenza Virus Productivity in MDCK Cells"

Ye, Qian

September 2021

Supplemental Table S1: The TPM of top 20 most abundant transcripts Supplemental Table S2: The enrich...

MicroRNA regulation of cellular mRNAs during influenza virus infection.

William A. Buggele (463461)
Katherine E. Krause (463462)
Curt M. Horvath (353261)

September 2013

<div><p>(A) A549 cells were mock infected, infected with A/WSN/33 (5 pfu/cell), or infected after tr...

Additional file 5: of Differential responses of innate immunity triggered by different subtypes of influenza a viruses in human and avian hosts

Yingying Cao (4777638)
Yaowei Huang (4777635)
Ke Xu (134879)
Yuanhua Liu (1676797)
Xuan Li (137217)
Ye Xu (29869)
Wu Zhong (2535388)
Pei Hao (27696)

December 2017

Table S6. Top 10 up-regulated differentially expressed genes (DEGs) in ileum and lung of chicken inf...

Additional file 2: of RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

Esther Wilk (150765)
Ashutosh Pandey (634350)
Sarah Leist (3486557)
Bastian Hatesuer (493136)
Matthias Preusse (3548096)
Claudia Pommerenke (150761)
Junxi Wang (3548099)
Klaus Schughart (150782)

September 2015

Supplemental Material. Detailed discussion of known biological functions of genes from TablesÂ 2 and...

Additional file 1: of The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p

Zsolt Czimmerer (285768)
Tamas Varga (1482442)
Mate Kiss (3576902)
Cesaré Vázquez (3576884)
Quang Doan-Xuan (3576887)
Dominik Rückerl (528133)
Sudhir Tattikota (3576881)
Xin Yan (17064)
Zsuzsanna Nagy (64689)
Bence Daniel (3576893)
Szilard Poliska (3576899)
Attila Horvath (285787)
Gergely Nagy (1611460)
Eva Varallyay (285776)
Matthew Poy (3576905)
Judith Allen (3576896)
Zsolt Bacso (3576890)
Cei Abreu-Goodger (10072)
Laszlo Nagy (285790)

May 2016

List of qPCR assays and primer sequences for gene expression analysis. (XLSX 11 kb

Additional file 5: of Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection

Guillaume Carissimo (2636878)
Adrien Pain (700727)
Eugeni Belda (160587)
Kenneth Vernick (736310)

July 2018

Figure S3. Venn diagram of A. coluzzii differentially expressed miRNAs during ONNV infection. Mosqui...

Systems-level comparison of host-responses elicited by avian H5N1 and seasonal H1N1 influenza viruses in primary human macrophages.

Suki M Y Lee
Jennifer L Gardy
C Y Cheung
Timothy K W Cheung
Kenrie P Y Hui
Nancy Y Ip
Y Guan
Robert E W Hancock
J S Malik Peiris

December 2009

Human disease caused by highly pathogenic avian influenza (HPAI) H5N1 can lead to a rapidly progress...

Additional file 5: of Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Abstract

Extracted data

Additional file 5: of Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection

Abstract

Extracted data

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