Sequence differences of VAC-BAC clones no. 3 and no. 4 from authentic LC16m8 except for the EGFP-BAC region.

Sequence variations of HPV-18.

Mengjie Shen (381810)
Xianping Ding (381811)
Tianjun Li (381812)
Gangyi Chen (381813)
Xiao Zhou (122661)

February 2013

Sequence variations of HPV-18 E1, E2, E6, E7, L1 and L2 were based on the HPV-18 reference sequen...

Cloned pre-mir-122 stem-loop region sequences from HepG2 DNA show two different haplotypes.

Ibrahim A. Y. Hamad (712898)
Yue Fei (712899)
Anastasia Z. Kalea (315611)
Dan Yin (712900)
Andrew J. P. Smith (142601)
Jutta Palmen (142608)
Steve E. Humphries (142616)
Philippa J. Talmud (142613)
Ann P. Walker (712901)

March 2015

(A) Cloned DNA sequences obtained after amplification with Taq polymerase. Two haplotypes (differ...

Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene Sequences

Speksnijder, A.G.C.L.
Kowalchuk, G.A.
Jong, S., de
Kline, E.
Stephen, J.R.
Laanbroek, H.J.

January 2001

A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experi...

Identity of the ITR region in authentic m8 and 8.8S-clone4, a clone that was plaque-purified from EGFP-negative and bacterial replicon-free vLC16m8.8S-BAC.

Tomoki Yoshikawa (367816)
Hikaru Fujii (4884679)
Akiko Okutani (4884673)
Miho Shibamura (4884664)
Natsumi Omura (4884676)
Kazutaka Egawa (2591485)
Hirofumi Kato (2726779)
Takuya Inagaki (1620547)
Shizuko Harada (4884670)
Souichi Yamada (4884667)
Shigeru Morikawa (58979)
Masayuki Saijo (324701)

February 2018

The coverage depth computed by the alignment of short-reads to the sequence of the left ITR regio...

Differences between BA71 and BA71V: changes in polynucleotide sequences.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

The position of the differences in each genome is indicated along with the size of the change, in...

Nucleotide sequence variations and amino acid changes within the E1 ORF of intact HPV16 isolates among the samples (non-malignant samples and CaCx cases) analysed.

Paramita Mandal (418576)
Bornali Bhattacharjee (137672)
Damayanti Das Ghosh (137668)
Nidhu Ranjan Mondal (418577)
Rahul Roy Chowdhury (137681)
Sudipta Roy (137684)
Sharmila Sengupta (137687)

June 2013

Nucleotide sequence variations and amino acid changes within the E1 ORF of intact HPV16 isolates ...

Sequence alignment comparing RhCMV-eGFP to RhCMV 68–1 BAC.

Angie K. Marsh (317828)
Aruna P. Ambagala (714677)
Catia T. Perciani (714678)
Justen N. Hoffman Russell (714679)
Jacqueline K. Chan (317832)
Michelle Janes (714680)
Joseph M. Antony (591731)
Richard Pilon (280730)
Paul Sandstrom (52352)
David O. Willer (317829)
Kelly S. MacDonald (317833)

March 2015

Sequence of RhCMV-eGFP obtained from NGS analysis was aligned with that of RhCMV 68–1 BAC (JQ7959...

Comparison of the variability of the V4 region barcode used in this study (333 bp) with a 1682 bp fragment representing most of the full 18S gene.

Ian A. Luddington (133546)
Irena Kaczmarska (133550)
Connie Lovejoy (133554)

September 2012

All comparisons represented are between one sequence each of the same strain/clone. Differences a...

List of miR156b,c,d sequences cloned by miR-RACE

Wang, Baoju
Wang, Jian
Wang, Chen
Shen, Wenbiao
Jia, Haifeng
Zhu, Xudong
Li, Xiaopeng

May 2016

This file contained the three sequences of mature miR156b,c,d cloned by miR-RACE, these three seqe...

Nucleotide sequence variations of LCR/E6 among HPV16 isolates.

Sonia Pérez (612955)
Ana Cid (612956)
Amparo Iñarrea (612957)
Mónica Pato (612958)
María José Lamas (612959)
Bárbara Couso (612960)
Margarita Gil (612961)
María Jesús Álvarez (612962)
Sonia Rey (612963)
Isabel López-Miragaya (612964)
Santiago Melón (276223)
María de Oña (276228)

August 2014

Position number refers to the HPV 16 prototype sequence previously described <a href="http://www....

Sequence alignments of the VH and Vκ regions encoded by the selected clones.

César Monzó (293908)
Alberto Urbaneja (293910)
Miguel Ximénez-Embún (293911)
Julia García-Fernández (293912)
José Luis García (293913)
Pedro Castañera (143338)

February 2013

Panel A. Sequence alignment of the VH region. Black color indicates no differences among s...

Differences between BA71 and BA71V: Variations in the number or in the sequence of tandem repeats.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

The positions in the genome of BA71 and BA71V of the sequences affected are indicated along with ...

Positions of nucleotide and amino acid changes within the whole genome and E1 sequences of the major HPV16 variants containing the E1-1374∧63 duplication.

Ivan Sabol (148286)
Mihaela Matovina (148290)
Ali Si-Mohamed (148292)
Magdalena Grce (148295)

July 2012

anovel nucleotide changes are highlighted in bold and underlined.bchanges from the referen...

Summary of nucleotide differences for IP93 versus prototype EEHV1A(Kimba) and EEHV1B(Emelia).

A. Zachariah (5675798)
P. K. Sajesh (5675801)
S. Santhosh (3596567)
C. Bathrachalam (5675804)
M. Megha (5675807)
J. Pandiyan (5675810)
M. Jishnu (5675813)
R. S. Kobragade (5675816)
S. Y. Long (5675819)
J-C Zong (5675822)
E. M. Latimer (5675825)
S. Y. Heaggans (5675828)
G. S. Hayward (5675831)

August 2018

Summary of nucleotide differences for IP93 versus prototype EEHV1A(Kimba) and EEHV1B(Emelia).</p

Nucleotide and amino acid differences from the CV777 reference sequence AF353511.

Thomas Bruun Rasmussen (371068)
Maria Beatrice Boniotti (834456)
Alice Papetti (4904182)
Béatrice Grasland (4904185)
Jean-Pierre Frossard (4904188)
Akbar Dastjerdi (370258)
Marcel Hulst (3122097)
Dennis Hanke (3148359)
Anne Pohlmann (505800)
Sandra Blome (176123)
Wim H. M. van der Poel (346988)
Falko Steinbach (336180)
Yannick Blanchard (577101)
Antonio Lavazza (649637)
Anette Bøtner (72594)
Graham J. Belsham (116715)

March 2018

Nucleotide and amino acid differences from the CV777 reference sequence AF353511.</p

Sequence variations of HPV-18.

Mengjie Shen (381810)
Xianping Ding (381811)
Tianjun Li (381812)
Gangyi Chen (381813)
Xiao Zhou (122661)

February 2013

Sequence variations of HPV-18 E1, E2, E6, E7, L1 and L2 were based on the HPV-18 reference sequen...

Cloned pre-mir-122 stem-loop region sequences from HepG2 DNA show two different haplotypes.

Ibrahim A. Y. Hamad (712898)
Yue Fei (712899)
Anastasia Z. Kalea (315611)
Dan Yin (712900)
Andrew J. P. Smith (142601)
Jutta Palmen (142608)
Steve E. Humphries (142616)
Philippa J. Talmud (142613)
Ann P. Walker (712901)

March 2015

(A) Cloned DNA sequences obtained after amplification with Taq polymerase. Two haplotypes (differ...

Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene Sequences

Speksnijder, A.G.C.L.
Kowalchuk, G.A.
Jong, S., de
Kline, E.
Stephen, J.R.
Laanbroek, H.J.

January 2001

A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experi...

Identity of the ITR region in authentic m8 and 8.8S-clone4, a clone that was plaque-purified from EGFP-negative and bacterial replicon-free vLC16m8.8S-BAC.

Tomoki Yoshikawa (367816)
Hikaru Fujii (4884679)
Akiko Okutani (4884673)
Miho Shibamura (4884664)
Natsumi Omura (4884676)
Kazutaka Egawa (2591485)
Hirofumi Kato (2726779)
Takuya Inagaki (1620547)
Shizuko Harada (4884670)
Souichi Yamada (4884667)
Shigeru Morikawa (58979)
Masayuki Saijo (324701)

February 2018

The coverage depth computed by the alignment of short-reads to the sequence of the left ITR regio...

Differences between BA71 and BA71V: changes in polynucleotide sequences.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

The position of the differences in each genome is indicated along with the size of the change, in...

Nucleotide sequence variations and amino acid changes within the E1 ORF of intact HPV16 isolates among the samples (non-malignant samples and CaCx cases) analysed.

Paramita Mandal (418576)
Bornali Bhattacharjee (137672)
Damayanti Das Ghosh (137668)
Nidhu Ranjan Mondal (418577)
Rahul Roy Chowdhury (137681)
Sudipta Roy (137684)
Sharmila Sengupta (137687)

June 2013

Nucleotide sequence variations and amino acid changes within the E1 ORF of intact HPV16 isolates ...

Sequence alignment comparing RhCMV-eGFP to RhCMV 68–1 BAC.

Angie K. Marsh (317828)
Aruna P. Ambagala (714677)
Catia T. Perciani (714678)
Justen N. Hoffman Russell (714679)
Jacqueline K. Chan (317832)
Michelle Janes (714680)
Joseph M. Antony (591731)
Richard Pilon (280730)
Paul Sandstrom (52352)
David O. Willer (317829)
Kelly S. MacDonald (317833)

March 2015

Sequence of RhCMV-eGFP obtained from NGS analysis was aligned with that of RhCMV 68–1 BAC (JQ7959...

Comparison of the variability of the V4 region barcode used in this study (333 bp) with a 1682 bp fragment representing most of the full 18S gene.

Ian A. Luddington (133546)
Irena Kaczmarska (133550)
Connie Lovejoy (133554)

September 2012

All comparisons represented are between one sequence each of the same strain/clone. Differences a...

List of miR156b,c,d sequences cloned by miR-RACE

Wang, Baoju
Wang, Jian
Wang, Chen
Shen, Wenbiao
Jia, Haifeng
Zhu, Xudong
Li, Xiaopeng

May 2016

This file contained the three sequences of mature miR156b,c,d cloned by miR-RACE, these three seqe...

Nucleotide sequence variations of LCR/E6 among HPV16 isolates.

Sonia Pérez (612955)
Ana Cid (612956)
Amparo Iñarrea (612957)
Mónica Pato (612958)
María José Lamas (612959)
Bárbara Couso (612960)
Margarita Gil (612961)
María Jesús Álvarez (612962)
Sonia Rey (612963)
Isabel López-Miragaya (612964)
Santiago Melón (276223)
María de Oña (276228)

August 2014

Position number refers to the HPV 16 prototype sequence previously described <a href="http://www....

Sequence alignments of the VH and Vκ regions encoded by the selected clones.

César Monzó (293908)
Alberto Urbaneja (293910)
Miguel Ximénez-Embún (293911)
Julia García-Fernández (293912)
José Luis García (293913)
Pedro Castañera (143338)

February 2013

Panel A. Sequence alignment of the VH region. Black color indicates no differences among s...

Differences between BA71 and BA71V: Variations in the number or in the sequence of tandem repeats.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

The positions in the genome of BA71 and BA71V of the sequences affected are indicated along with ...

Positions of nucleotide and amino acid changes within the whole genome and E1 sequences of the major HPV16 variants containing the E1-1374∧63 duplication.

Ivan Sabol (148286)
Mihaela Matovina (148290)
Ali Si-Mohamed (148292)
Magdalena Grce (148295)

July 2012

anovel nucleotide changes are highlighted in bold and underlined.bchanges from the referen...

Summary of nucleotide differences for IP93 versus prototype EEHV1A(Kimba) and EEHV1B(Emelia).

A. Zachariah (5675798)
P. K. Sajesh (5675801)
S. Santhosh (3596567)
C. Bathrachalam (5675804)
M. Megha (5675807)
J. Pandiyan (5675810)
M. Jishnu (5675813)
R. S. Kobragade (5675816)
S. Y. Long (5675819)
J-C Zong (5675822)
E. M. Latimer (5675825)
S. Y. Heaggans (5675828)
G. S. Hayward (5675831)

August 2018

Summary of nucleotide differences for IP93 versus prototype EEHV1A(Kimba) and EEHV1B(Emelia).</p

Nucleotide and amino acid differences from the CV777 reference sequence AF353511.

Thomas Bruun Rasmussen (371068)
Maria Beatrice Boniotti (834456)
Alice Papetti (4904182)
Béatrice Grasland (4904185)
Jean-Pierre Frossard (4904188)
Akbar Dastjerdi (370258)
Marcel Hulst (3122097)
Dennis Hanke (3148359)
Anne Pohlmann (505800)
Sandra Blome (176123)
Wim H. M. van der Poel (346988)
Falko Steinbach (336180)
Yannick Blanchard (577101)
Antonio Lavazza (649637)
Anette Bøtner (72594)
Graham J. Belsham (116715)

March 2018

Nucleotide and amino acid differences from the CV777 reference sequence AF353511.</p

Sequence variations of HPV-18.

Mengjie Shen (381810)
Xianping Ding (381811)
Tianjun Li (381812)
Gangyi Chen (381813)
Xiao Zhou (122661)

February 2013

Sequence variations of HPV-18 E1, E2, E6, E7, L1 and L2 were based on the HPV-18 reference sequen...

Cloned pre-mir-122 stem-loop region sequences from HepG2 DNA show two different haplotypes.

Ibrahim A. Y. Hamad (712898)
Yue Fei (712899)
Anastasia Z. Kalea (315611)
Dan Yin (712900)
Andrew J. P. Smith (142601)
Jutta Palmen (142608)
Steve E. Humphries (142616)
Philippa J. Talmud (142613)
Ann P. Walker (712901)

March 2015

(A) Cloned DNA sequences obtained after amplification with Taq polymerase. Two haplotypes (differ...

Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene Sequences

Speksnijder, A.G.C.L.
Kowalchuk, G.A.
Jong, S., de
Kline, E.
Stephen, J.R.
Laanbroek, H.J.

January 2001

A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experi...

Sequence differences of VAC-BAC clones no. 3 and no. 4 from authentic LC16m8 except for the EGFP-BAC region.

Abstract

Extracted data

Sequence differences of VAC-BAC clones no. 3 and no. 4 from authentic LC16m8 except for the EGFP-BAC region.

Abstract

Extracted data

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