MOESM3 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Crosstalk Between DNA and Histones: Tet’s New Role in Embryonic Stem

Xinyi Sui

August 2016

Abstract: Embryonic stem (ES) cells are characterized by the expression of an extensive and intercon...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

MOESM8 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 8: Figure S8. Deregulation of imprinted genes and TE-regulated genes upon Kap1 knock...

MOESM1 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 1: Figure S1. KAP1 removal leads to accumulation of 5hmC at ICRs and TEs

MOESM5 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 5: Figure S5. Correlation between loss of H3K9me3, accumulation of 5hmC and transcri...

MOESM7 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 7: Figure S7. Analysis of genomic features on TE-integrants of the same families clu...

MOESM2 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 2: Figure S2. KAP1-bound chromatin is protected from 5mC hydroxylation

Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells

Coluccio, Andrea
Ecco, Gabriela
Duc, Julien
Offner, Sandra
Turelli, Priscilla
Trono, Didier

February 2018

Background: The KZFP/KAP1 (KRAB zinc finger proteins/KRAB-associated protein 1) system plays a centr...

In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions

Quenneville S
Verde G
Corsinotti A
Kapopoulou A
Jakobsson J
Offner S
Baglivo I
Grimaldi G
Trono D.
PEDONE, Paolo Vincenzo
RICCIO, Andrea

January 2011

The maintenance of H3K9 and DNA methylation at imprinting control regions (ICRs) during early embryo...

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains.

Shi, Hui
Strogantsev, Ruslan
Takahashi, Nozomi
Kazachenka, Anastasiya
Lorincz, Matthew C
Hemberger, Myriam
Ferguson-Smith, Anne

August 2019

BACKGROUND: KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA-binding p...

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains

Shi, Hui
Strogantsev, Ruslan
Takahashi, Nozomi
Kazachenka, Anastasiya
Lorincz, Matthew C.
Hemberger, Myriam
Ferguson-Smith, Anne C.

August 2020

Abstract: Background: KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA...

Differential regulation of genomic imprinting by TET proteins in embryonic stem cells

Lizhi Liu
Shi-Qing Mao
Chelsea Ray
Yu Zhang
Fong T. Bell
Sheau-Fang Ng
Guo-Liang Xu
Xiajun Li

September 2015

TET proteins have been found to play an important role in active demethylation at CpG sites in mamma...

ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells

Anvar, Zahra
Cammisa, Marco
Riso, Vincenzo
BAGLIVO, Ilaria
Kukreja, Harpreet
Sparago, Angela
Girardot, Michael
Lad, Shraddha
De Feis, Italia
CERRATO, Flavia
Angelini, Claudia
Feil, Robert
PEDONE, Paolo Vincenzo
Grimaldi, Giovanna
RICCIO, Andrea

January 2016

Imprinting Control Regions (ICRs) need to maintain their parental allele-specific DNA methylation du...

Differential regulation of genomic imprinting by TET proteins in embryonic stem cells

Liu, Lizhi
Mao, Shi-Qing
Ray, Chelsea
Zhang, Yu
Bell, Fong T.
Ng, Sheau-Fang
Xu, Guo-Liang
Li, Xiajun

September 2015

AbstractTET proteins have been found to play an important role in active demethylation at CpG sites ...

Crosstalk Between DNA and Histones: Tet’s New Role in Embryonic Stem

Xinyi Sui

August 2016

Abstract: Embryonic stem (ES) cells are characterized by the expression of an extensive and intercon...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

MOESM8 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 8: Figure S8. Deregulation of imprinted genes and TE-regulated genes upon Kap1 knock...

MOESM1 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 1: Figure S1. KAP1 removal leads to accumulation of 5hmC at ICRs and TEs

MOESM5 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 5: Figure S5. Correlation between loss of H3K9me3, accumulation of 5hmC and transcri...

MOESM7 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 7: Figure S7. Analysis of genomic features on TE-integrants of the same families clu...

MOESM2 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Andrea Coluccio (4890100)
Gabriela Ecco (2125696)
Julien Duc (3857275)
Sandra Offner (4890097)
Priscilla Turelli (272671)
Didier Trono (25360)

February 2018

Additional file 2: Figure S2. KAP1-bound chromatin is protected from 5mC hydroxylation

Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naïve embryonic stem cells

Coluccio, Andrea
Ecco, Gabriela
Duc, Julien
Offner, Sandra
Turelli, Priscilla
Trono, Didier

February 2018

Background: The KZFP/KAP1 (KRAB zinc finger proteins/KRAB-associated protein 1) system plays a centr...

In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions

Quenneville S
Verde G
Corsinotti A
Kapopoulou A
Jakobsson J
Offner S
Baglivo I
Grimaldi G
Trono D.
PEDONE, Paolo Vincenzo
RICCIO, Andrea

January 2011

The maintenance of H3K9 and DNA methylation at imprinting control regions (ICRs) during early embryo...

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains.

Shi, Hui
Strogantsev, Ruslan
Takahashi, Nozomi
Kazachenka, Anastasiya
Lorincz, Matthew C
Hemberger, Myriam
Ferguson-Smith, Anne

August 2019

BACKGROUND: KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA-binding p...

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains

Shi, Hui
Strogantsev, Ruslan
Takahashi, Nozomi
Kazachenka, Anastasiya
Lorincz, Matthew C.
Hemberger, Myriam
Ferguson-Smith, Anne C.

August 2020

Abstract: Background: KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA...

Differential regulation of genomic imprinting by TET proteins in embryonic stem cells

Lizhi Liu
Shi-Qing Mao
Chelsea Ray
Yu Zhang
Fong T. Bell
Sheau-Fang Ng
Guo-Liang Xu
Xiajun Li

September 2015

TET proteins have been found to play an important role in active demethylation at CpG sites in mamma...

ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells

Anvar, Zahra
Cammisa, Marco
Riso, Vincenzo
BAGLIVO, Ilaria
Kukreja, Harpreet
Sparago, Angela
Girardot, Michael
Lad, Shraddha
De Feis, Italia
CERRATO, Flavia
Angelini, Claudia
Feil, Robert
PEDONE, Paolo Vincenzo
Grimaldi, Giovanna
RICCIO, Andrea

January 2016

Imprinting Control Regions (ICRs) need to maintain their parental allele-specific DNA methylation du...

Differential regulation of genomic imprinting by TET proteins in embryonic stem cells

Liu, Lizhi
Mao, Shi-Qing
Ray, Chelsea
Zhang, Yu
Bell, Fong T.
Ng, Sheau-Fang
Xu, Guo-Liang
Li, Xiajun

September 2015

AbstractTET proteins have been found to play an important role in active demethylation at CpG sites ...

Crosstalk Between DNA and Histones: Tet’s New Role in Embryonic Stem

Xinyi Sui

August 2016

Abstract: Embryonic stem (ES) cells are characterized by the expression of an extensive and intercon...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1

Leung, Danny
Du, Tingting
Wagner, Ulrich
Xie, Wei
Lee, Ah Young
Goyal, Preeti
Li, Yujing
Szulwach, Keith E.
Jin, Peng
Lorincz, Matthew C.
Ren, Bing

January 2014

During mammalian development, DNA methylation patterns need to be reset in primordial germ cells (PG...

MOESM3 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Abstract

Extracted data

MOESM3 of Individual retrotransposon integrants are differentially controlled by KZFP/KAP1-dependent histone methylation, DNA methylation and TET-mediated hydroxymethylation in naĂŻve embryonic stem cells

Abstract

Extracted data

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