Additional file 4: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Additional file 23: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B16 phages. Represented as mentioned above. (PDF 23 kb

Additional file 32: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster D2 phages. Represented as mentioned above. (PDF 35 kb

Additional file 20: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B13 phages. Represented as mentioned above. (PDF 36 kb

Additional file 5: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S4. Genome organization of phage E1. See Additional file 2: Figure S1 for details. (PDF 152Â ...

Additional file 6: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S5. Genome organization of phage B3. See Additional file 2: Figure S1 for details. (PDF 159Â ...

Additional file 3: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S2. Genome organization of phage E6. See Additional file 2: Figure S1 for details. (PDF 161Â ...

Additional file 1: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Table S1. P. freudenreichii strains used in this study. Table S2. Average nucleotide identities of P...

Additional file 2: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
Noël Grosset (4901245)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S1. Genome organization of phage B22. Predicted genes are shown as boxes either above or belo...

Additional file 7: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S6. Phylogenetic tree of tandemly repeated genes in P. freudenreichii phages. The four Cluste...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

March 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

March 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

December 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Additional file 28: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster C4 phages. Represented as mentioned above. (PDF 37 kb

Additional file 21: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B14 phages. Represented as mentioned above. (PDF 24 kb

Additional file 11: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B4 phages. Represented as mentioned above. (PDF 111 kb

Additional file 23: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B16 phages. Represented as mentioned above. (PDF 23 kb

Additional file 32: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster D2 phages. Represented as mentioned above. (PDF 35 kb

Additional file 20: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B13 phages. Represented as mentioned above. (PDF 36 kb

Additional file 5: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S4. Genome organization of phage E1. See Additional file 2: Figure S1 for details. (PDF 152Â ...

Additional file 6: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S5. Genome organization of phage B3. See Additional file 2: Figure S1 for details. (PDF 159Â ...

Additional file 3: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S2. Genome organization of phage E6. See Additional file 2: Figure S1 for details. (PDF 161Â ...

Additional file 1: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Table S1. P. freudenreichii strains used in this study. Table S2. Average nucleotide identities of P...

Additional file 2: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
Noël Grosset (4901245)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S1. Genome organization of phage B22. Predicted genes are shown as boxes either above or belo...

Additional file 7: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Lucy Cheng (4901179)
Laura Marinelli (4901185)
NoĂŤl Grosset (4901173)
Sorel Fitz-Gibbon (3251946)
Charles Bowman (4901176)
Brian Dang (4901188)
Daniel Russell (2094130)
Deborah Jacobs-Sera (199566)
Baochen Shi (16761)
Matteo Pellegrini (2078)
Jeff Miller (4901182)
Michel Gautier (492401)
Graham Hatfull (3402956)
Robert Modlin (4535785)

March 2018

Figure S6. Phylogenetic tree of tandemly repeated genes in P. freudenreichii phages. The four Cluste...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

March 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages.

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

March 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Cheng, Lucy
Marinelli, Laura J
Grosset, Noël
Fitz-Gibbon, Sorel T
Bowman, Charles A
Dang, Brian Q
Russell, Daniel A
Jacobs-Sera, Deborah
Shi, Baochen
Pellegrini, Matteo
Miller, Jeff F
Gautier, Michel
Hatfull, Graham F
Modlin, Robert L

December 2018

BACKGROUND:A remarkable exception to the large genetic diversity often observed for bacteriophages i...

Additional file 28: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster C4 phages. Represented as mentioned above. (PDF 37 kb

Additional file 21: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B14 phages. Represented as mentioned above. (PDF 24 kb

Additional file 11: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B4 phages. Represented as mentioned above. (PDF 111 kb

Additional file 23: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B16 phages. Represented as mentioned above. (PDF 23 kb

Additional file 32: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster D2 phages. Represented as mentioned above. (PDF 35 kb

Additional file 20: of Staphylococci phages display vast genomic diversity and evolutionary relationships

Hugo Oliveira (640866)
Marta Sampaio (6687581)
Luís Melo (556249)
Oscar Dias (6687587)
Welkin Pope (3402965)
Graham Hatfull (3402956)
Joana Azeredo (165240)

May 2019

Whole-genome map of subcluster B13 phages. Represented as mentioned above. (PDF 36 kb

Additional file 4: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Abstract

Extracted data

Additional file 4: of Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages

Abstract

Extracted data

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