Table S1. Functional comparison between ATACseqQC and existing tools for ATAC-seq data QC analyses. (XLSX 14 kb
Figure S1. Read count correlations of all K562 datasets and comparison of K562 ATAC-seq datasets gen...
Table S19. ATAC-seq peaks significantly differentially enriched (DESeq2 nominal p < 0.2) in Other Ce...
Pearson correlation values and P-values of extracted features in page 5, Section: Data Analysis. (XL...
Figure S1. Size distributions of sequenced fragments passing filtering criteria. NCBI SRA accession ...
Figure S3. Diagnostic plots for subsampled datasets. Figs. A-D, E-H, I-L and M-P are based on 10%, 2...
BACKGROUND: ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing) is a recently de...
Scoring system of BIOCROSS: A Userâs Guide to BIOCROSS. Point-by-point description to enable the a...
Table S1. Detailed sequence analysis information for ATAC-seq sequence reads. (DOCX 68Â kb
Maintenance and troubleshooting log, and troubleshooting of CPET systems consequent to a failing Bio...
Description of data: Quality Appraisal of a Clinical Measurement Study Tool and Interpretation Guide...
Table S5.ATAC-seq peaks significantly differentially enriched (DESSeq2 nominal p < 0.2) in isolated ...
Independent Ethics Committees and Institutional Review Boards for ClinicalTrial.gov: NCT01072396. (P...
Figure S3. Visual inspection reveals consistent overlap between HOMER peaks and OCRs at peak size of...
Table S1. Parameters passed to each pipeline. Default, AUC-optimized and reproducibility-optimized p...
Figure S2. Trimming reads improves alignment of the GM12878 ATAC-seq reads. Tn5 transposase attaches...
Figure S1. Read count correlations of all K562 datasets and comparison of K562 ATAC-seq datasets gen...
Table S19. ATAC-seq peaks significantly differentially enriched (DESeq2 nominal p < 0.2) in Other Ce...
Pearson correlation values and P-values of extracted features in page 5, Section: Data Analysis. (XL...
Figure S1. Size distributions of sequenced fragments passing filtering criteria. NCBI SRA accession ...
Figure S3. Diagnostic plots for subsampled datasets. Figs. A-D, E-H, I-L and M-P are based on 10%, 2...
BACKGROUND: ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing) is a recently de...
Scoring system of BIOCROSS: A Userâs Guide to BIOCROSS. Point-by-point description to enable the a...
Table S1. Detailed sequence analysis information for ATAC-seq sequence reads. (DOCX 68Â kb
Maintenance and troubleshooting log, and troubleshooting of CPET systems consequent to a failing Bio...
Description of data: Quality Appraisal of a Clinical Measurement Study Tool and Interpretation Guide...
Table S5.ATAC-seq peaks significantly differentially enriched (DESSeq2 nominal p < 0.2) in isolated ...
Independent Ethics Committees and Institutional Review Boards for ClinicalTrial.gov: NCT01072396. (P...
Figure S3. Visual inspection reveals consistent overlap between HOMER peaks and OCRs at peak size of...
Table S1. Parameters passed to each pipeline. Default, AUC-optimized and reproducibility-optimized p...
Figure S2. Trimming reads improves alignment of the GM12878 ATAC-seq reads. Tn5 transposase attaches...
Figure S1. Read count correlations of all K562 datasets and comparison of K562 ATAC-seq datasets gen...
Table S19. ATAC-seq peaks significantly differentially enriched (DESeq2 nominal p < 0.2) in Other Ce...
Pearson correlation values and P-values of extracted features in page 5, Section: Data Analysis. (XL...
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