Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

Nucleotide and amino acid differences from the CV777 reference sequence AF353511.

Thomas Bruun Rasmussen (371068)
Maria Beatrice Boniotti (834456)
Alice Papetti (4904182)
Béatrice Grasland (4904185)
Jean-Pierre Frossard (4904188)
Akbar Dastjerdi (370258)
Marcel Hulst (3122097)
Dennis Hanke (3148359)
Anne Pohlmann (505800)
Sandra Blome (176123)
Wim H. M. van der Poel (346988)
Falko Steinbach (336180)
Yannick Blanchard (577101)
Antonio Lavazza (649637)
Anette Bøtner (72594)
Graham J. Belsham (116715)

Publication date

March 2018

DOI

10.1371/journal.pone.0193682.t001

Abstract

<p>Nucleotide and amino acid differences from the CV777 reference sequence AF353511.</p

Extracted data

Related items

Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains.

Yuka Nadai (83285)
Lindsay M. Eyzaguirre (83286)
Anne Sill (373942)
Farley Cleghorn (63068)
Claudine Nolte (75069)
Manhattan Charurat (349559)
Santiago Collado-Chastel (373943)
Noreen Jack (373944)
Courtenay Bartholomew (373945)
Jean W. Pape (247988)
Peter Figueroa (373946)
William A. Blattner (83289)
Jean K. Carr (83290)

February 2013

<p>Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains....

Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of surface proteins between avian influenza H9N2 TS and V viruses.

Xiaokang Li (158714)
Wenbao Qi (158713)
Jun He (46556)
Zhangyong Ning (294928)
Yue Hu (201714)
Jin Tian (158712)
Peirong Jiao (158715)
Chenggang Xu (308713)
Jianxin Chen (161391)
Juergen Richt (317784)
Wenjun Ma (151952)
Ming Liao (123342)

February 2013

<p>Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of su...

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of selected orthobunyaviruses.

James I. Dunlop (4861777)
Agnieszka M. Szemiel (305293)
Aitor Navarro (5904680)
Gavin S. Wilkie (694115)
Lily Tong (5904683)
Sejal Modha (171848)
Daniel Mair (5849150)
Vattipally B. Sreenu (4517956)
Ana Da Silva Filipe (3195999)
Ping Li (31981)
Yan-Jang S. Huang (741918)
Benjamin Brennan (522804)
Joseph Hughes (42279)
Dana L. Vanlandingham (200110)
Stephen Higgs (78539)
Richard M. Elliott (252934)
Alain Kohl (252931)

November 2018

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of select...

Summary of nucleotide and amino acid differences in the coding regions of the five ILTV strains <i>vs</i> the genome sequence of the NCBI ILTV reference sequence (Serva strain).

Alessandra Piccirillo (2148712)
Enrico Lavezzo (2148718)
Giulia Niero (2148721)
Ana Moreno (90186)
Paola Massi (474656)
Elisa Franchin (2148724)
Stefano Toppo (21613)
Cristiano Salata (2148715)
Giorgio Palù (80312)

February 2016

<p>Summary of nucleotide and amino acid differences in the coding regions of the five ILTV strains <...

Differences between BA71 and BA71V: changes in polynucleotide sequences.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

<p>The position of the differences in each genome is indicated along with the size of the change, in...

Nucleotide and amino acid differences along the coding sequences of all the Uruguayan CPV-2c and CPV-2a strains, and recombinant 364-rec strain (KM457139).

Ruben Pérez (518957)
Lucía Calleros (653829)
Ana Marandino (653830)
Nicolás Sarute (582477)
Gregorio Iraola (144706)
Sofia Grecco (653831)
Hervé Blanc (3561122)
Marco Vignuzzi (238667)
Ofer Isakov (528509)
Noam Shomron (86157)
Lucía Carrau (653832)
Martín Hernández (582480)
Lourdes Francia (582481)
Katia Sosa (653833)
Gonzalo Tomás (3384635)
Yanina Panzera (582482)

November 2014

a<p>VP1 Intron. Nucleotides in bold represent identical sequences. Amino acids before and after posi...

Percentage difference of the nucleotides (A) and amino acids (B) of the N protein of MOKV isolates.

Joe Kgaladi (476255)
Nicolette Wright (476256)
Jessica Coertse (476257)
Wanda Markotter (392368)
Denise Marston (476258)
Anthony R. Fooks (44966)
Conrad M. Freuling (370255)
Thomas F. Müller (476259)
Claude T. Sabeta (476260)
Louis H. Nel (392369)

October 2013

<p>Percentage difference of the nucleotides (A) and amino acids (B) of the N protein of MOKV isolate...

Nucleotide and amino acid sequence identity values for a partial sequence of the L segment of some isolations and referential group C orthobunyavirus.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for a partial sequence of the L segment of som...

Occurrence of nucleotide sequence variation among contigs assembled from SFP, FTC, DD and WD sequence reads.

Rosane Silva (398005)
Darcy Muniz de Almeida (5819870)
Bianca Catarina Azeredo Cabral (5819873)
Victor Hugo Giordano Dias (5819876)
Isadora Cristina de Toledo e Mello (5819879)
Turán Péter Ürményi (5819882)
August E. Woerner (261456)
Rodrigo Soares de Moura Neto (5819885)
Bruce Budowle (322785)
Cristina Aparecida Gomes Nassar (5819888)

October 2018

Total base pairs are represented as dark blue bars; Total nucleotide variation as light blue bars; i...

Nucleotide and amino acid sequence identity values for partial sequence of the M segment from some isolates and reference group C orthobunyaviruses.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for partial sequence of the M segment from som...

Pairwise nucleotide and amino acid sequence identities between the CVB4 strains and prototype EV-B strains.

Xiaoling Tian (529803)
Yong Zhang (5893)
Suyi Gu (169631)
Yaochun Fan (529804)
Qiang Sun (225630)
Bo Zhang (6559)
Shaohong Yan (529805)
Wenbo Xu (148718)
Xueen Ma (529806)
Wenrui Wang (529807)

March 2014

<p>Pairwise nucleotide and amino acid sequence identities between the CVB4 strains and prototype EV-...

Nucleotide mutations and Amino acid substitutions identified in 5′UTR and P1 Coding region of Index case (1321) and cVDPVs.

Salmaan Sharif (404090)
Bilal Haider Abbasi (524023)
Adnan Khurshid (404087)
Muhammad Masroor Alam (404086)
Shahzad Shaukat (404089)
Mehar Angez (404091)
Muhammad Suleman Rana (404088)
Syed Sohail Zahoor Zaidi (311037)

February 2014

<p>Nucleotide mutations and Amino acid substitutions identified in 5′UTR and P1 Coding region of Ind...

Nucleotide and amino acid sequence identity values for a partial sequence of the S segment from some isolates and reference group C orthobunyaviruses.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for a partial sequence of the S segment from s...

Nucleotide and amino acid identities between the novel LRV1 sequences and those available in the databases, as reported by clades (A-F).

Sourakhata Tirera (4251970)
Marine Ginouves (4251967)
Damien Donato (462272)
Ignacio S. Caballero (406957)
Christiane Bouchier (85962)
Anne Lavergne (388844)
Eliane Bourreau (3131931)
Emilie Mosnier (583471)
Vincent Vantilcke (517358)
Pierre Couppié (342022)
Ghislaine Prevot (4251964)
Vincent Lacoste (848239)

July 2017

<p>Nucleotide and amino acid identities between the novel LRV1 sequences and those available in the ...

Synonymous nucleotide substitution per synonymous site and nonsynonymous nucleotide substitution per nonsynonymous site and the standard deviations between three <i>Pvmsp-7</i> genes.

Diego Garzón-Ospina (132980)
Carolina López (132985)
Johanna Forero-Rodríguez (132988)
Manuel A. Patarroyo (132989)

September 2012

<p>5′-end from nucleotides 1 to 384 (amino acids 1 to 128), central region from nucleotides 385 to 8...

Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains.

Yuka Nadai (83285)
Lindsay M. Eyzaguirre (83286)
Anne Sill (373942)
Farley Cleghorn (63068)
Claudine Nolte (75069)
Manhattan Charurat (349559)
Santiago Collado-Chastel (373943)
Noreen Jack (373944)
Courtenay Bartholomew (373945)
Jean W. Pape (247988)
Peter Figueroa (373946)
William A. Blattner (83289)
Jean K. Carr (83290)

February 2013

<p>Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains....

Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of surface proteins between avian influenza H9N2 TS and V viruses.

Xiaokang Li (158714)
Wenbao Qi (158713)
Jun He (46556)
Zhangyong Ning (294928)
Yue Hu (201714)
Jin Tian (158712)
Peirong Jiao (158715)
Chenggang Xu (308713)
Jianxin Chen (161391)
Juergen Richt (317784)
Wenjun Ma (151952)
Ming Liao (123342)

February 2013

<p>Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of su...

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of selected orthobunyaviruses.

James I. Dunlop (4861777)
Agnieszka M. Szemiel (305293)
Aitor Navarro (5904680)
Gavin S. Wilkie (694115)
Lily Tong (5904683)
Sejal Modha (171848)
Daniel Mair (5849150)
Vattipally B. Sreenu (4517956)
Ana Da Silva Filipe (3195999)
Ping Li (31981)
Yan-Jang S. Huang (741918)
Benjamin Brennan (522804)
Joseph Hughes (42279)
Dana L. Vanlandingham (200110)
Stephen Higgs (78539)
Richard M. Elliott (252934)
Alain Kohl (252931)

November 2018

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of select...

Summary of nucleotide and amino acid differences in the coding regions of the five ILTV strains <i>vs</i> the genome sequence of the NCBI ILTV reference sequence (Serva strain).

Alessandra Piccirillo (2148712)
Enrico Lavezzo (2148718)
Giulia Niero (2148721)
Ana Moreno (90186)
Paola Massi (474656)
Elisa Franchin (2148724)
Stefano Toppo (21613)
Cristiano Salata (2148715)
Giorgio Palù (80312)

February 2016

<p>Summary of nucleotide and amino acid differences in the coding regions of the five ILTV strains <...

Differences between BA71 and BA71V: changes in polynucleotide sequences.

Javier M. Rodríguez (569553)
Leticia Tais Moreno (342433)
Alí Alejo (5662078)
Anna Lacasta (305463)
Fernando Rodríguez (295281)
María L. Salas (831738)

November 2015

<p>The position of the differences in each genome is indicated along with the size of the change, in...

Nucleotide and amino acid differences along the coding sequences of all the Uruguayan CPV-2c and CPV-2a strains, and recombinant 364-rec strain (KM457139).

Ruben Pérez (518957)
Lucía Calleros (653829)
Ana Marandino (653830)
Nicolás Sarute (582477)
Gregorio Iraola (144706)
Sofia Grecco (653831)
Hervé Blanc (3561122)
Marco Vignuzzi (238667)
Ofer Isakov (528509)
Noam Shomron (86157)
Lucía Carrau (653832)
Martín Hernández (582480)
Lourdes Francia (582481)
Katia Sosa (653833)
Gonzalo Tomás (3384635)
Yanina Panzera (582482)

November 2014

a<p>VP1 Intron. Nucleotides in bold represent identical sequences. Amino acids before and after posi...

Percentage difference of the nucleotides (A) and amino acids (B) of the N protein of MOKV isolates.

Joe Kgaladi (476255)
Nicolette Wright (476256)
Jessica Coertse (476257)
Wanda Markotter (392368)
Denise Marston (476258)
Anthony R. Fooks (44966)
Conrad M. Freuling (370255)
Thomas F. Müller (476259)
Claude T. Sabeta (476260)
Louis H. Nel (392369)

October 2013

<p>Percentage difference of the nucleotides (A) and amino acids (B) of the N protein of MOKV isolate...

Nucleotide and amino acid sequence identity values for a partial sequence of the L segment of some isolations and referential group C orthobunyavirus.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for a partial sequence of the L segment of som...

Occurrence of nucleotide sequence variation among contigs assembled from SFP, FTC, DD and WD sequence reads.

Rosane Silva (398005)
Darcy Muniz de Almeida (5819870)
Bianca Catarina Azeredo Cabral (5819873)
Victor Hugo Giordano Dias (5819876)
Isadora Cristina de Toledo e Mello (5819879)
Turán Péter Ürményi (5819882)
August E. Woerner (261456)
Rodrigo Soares de Moura Neto (5819885)
Bruce Budowle (322785)
Cristina Aparecida Gomes Nassar (5819888)

October 2018

Total base pairs are represented as dark blue bars; Total nucleotide variation as light blue bars; i...

Nucleotide and amino acid sequence identity values for partial sequence of the M segment from some isolates and reference group C orthobunyaviruses.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for partial sequence of the M segment from som...

Pairwise nucleotide and amino acid sequence identities between the CVB4 strains and prototype EV-B strains.

Xiaoling Tian (529803)
Yong Zhang (5893)
Suyi Gu (169631)
Yaochun Fan (529804)
Qiang Sun (225630)
Bo Zhang (6559)
Shaohong Yan (529805)
Wenbo Xu (148718)
Xueen Ma (529806)
Wenrui Wang (529807)

March 2014

<p>Pairwise nucleotide and amino acid sequence identities between the CVB4 strains and prototype EV-...

Nucleotide mutations and Amino acid substitutions identified in 5′UTR and P1 Coding region of Index case (1321) and cVDPVs.

Salmaan Sharif (404090)
Bilal Haider Abbasi (524023)
Adnan Khurshid (404087)
Muhammad Masroor Alam (404086)
Shahzad Shaukat (404089)
Mehar Angez (404091)
Muhammad Suleman Rana (404088)
Syed Sohail Zahoor Zaidi (311037)

February 2014

<p>Nucleotide mutations and Amino acid substitutions identified in 5′UTR and P1 Coding region of Ind...

Nucleotide and amino acid sequence identity values for a partial sequence of the S segment from some isolates and reference group C orthobunyaviruses.

Roger M. Castillo Oré (5537309)
Roxana E. Caceda (5537312)
Alfredo A. Huaman (5537318)
Maya Williams (476301)
Jun Hang (403561)
Diana E. Juarez (5537315)
Tadeusz J. Kochel (137222)
Eric S. Halsey (129244)
Brett M. Forshey (249475)

July 2018

<p>Nucleotide and amino acid sequence identity values for a partial sequence of the S segment from s...

Nucleotide and amino acid identities between the novel LRV1 sequences and those available in the databases, as reported by clades (A-F).

Sourakhata Tirera (4251970)
Marine Ginouves (4251967)
Damien Donato (462272)
Ignacio S. Caballero (406957)
Christiane Bouchier (85962)
Anne Lavergne (388844)
Eliane Bourreau (3131931)
Emilie Mosnier (583471)
Vincent Vantilcke (517358)
Pierre Couppié (342022)
Ghislaine Prevot (4251964)
Vincent Lacoste (848239)

July 2017

<p>Nucleotide and amino acid identities between the novel LRV1 sequences and those available in the ...

Synonymous nucleotide substitution per synonymous site and nonsynonymous nucleotide substitution per nonsynonymous site and the standard deviations between three <i>Pvmsp-7</i> genes.

Diego Garzón-Ospina (132980)
Carolina López (132985)
Johanna Forero-Rodríguez (132988)
Manuel A. Patarroyo (132989)

September 2012

<p>5′-end from nucleotides 1 to 384 (amino acids 1 to 128), central region from nucleotides 385 to 8...

Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains.

Yuka Nadai (83285)
Lindsay M. Eyzaguirre (83286)
Anne Sill (373942)
Farley Cleghorn (63068)
Claudine Nolte (75069)
Manhattan Charurat (349559)
Santiago Collado-Chastel (373943)
Noreen Jack (373944)
Courtenay Bartholomew (373945)
Jean W. Pape (247988)
Peter Figueroa (373946)
William A. Blattner (83289)
Jean K. Carr (83290)

February 2013

<p>Amino acid sites that differ between the Caribbean B strains and the subtype B reference strains....

Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of surface proteins between avian influenza H9N2 TS and V viruses.

Xiaokang Li (158714)
Wenbao Qi (158713)
Jun He (46556)
Zhangyong Ning (294928)
Yue Hu (201714)
Jin Tian (158712)
Peirong Jiao (158715)
Chenggang Xu (308713)
Jianxin Chen (161391)
Juergen Richt (317784)
Wenjun Ma (151952)
Ming Liao (123342)

February 2013

<p>Amino acid differences between avian influenza H9N2 TS and V viruses Amino acid differences of su...

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of selected orthobunyaviruses.

James I. Dunlop (4861777)
Agnieszka M. Szemiel (305293)
Aitor Navarro (5904680)
Gavin S. Wilkie (694115)
Lily Tong (5904683)
Sejal Modha (171848)
Daniel Mair (5849150)
Vattipally B. Sreenu (4517956)
Ana Da Silva Filipe (3195999)
Ping Li (31981)
Yan-Jang S. Huang (741918)
Benjamin Brennan (522804)
Joseph Hughes (42279)
Dana L. Vanlandingham (200110)
Stephen Higgs (78539)
Richard M. Elliott (252934)
Alain Kohl (252931)

November 2018

Amino acid and nucleotide sequence identity comparisons across entire S, M, and L segments of select...