Additional file 1: of Heme oxygenase-1 promoter region (GT)n polymorphism associates with increased neuroimmune activation and risk for encephalitis in HIV infection

Additional file 6: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Katherine Tansey (4889533)
Darren Cameron (4889530)
Matthew Hill (394308)

February 2018

Figure S1. Open chromatin regions (OCRs) identified in macrophages and microglia at Alzheimer’s dise...

Additional file 1: of Identification of novel genes associated with HIV-1 latency by analysis of histone modifications

Kyung-Chang Kim (4023503)
Sunyoung Lee (767697)
Junseock Son (4023500)
Younghyun Shin (4023494)
Cheol-Hee Yoon (147189)
Chun Kang (4023491)
Byeong-Sun Choi (4023497)

May 2017

Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...

Additional file 2: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of coding block haplotype GG and separated by race. The s...

Heme oxygenase-1 promoter region (GT)n polymorphism associates with increased neuroimmune activation and risk for encephalitis in HIV infection

Alexander J. Gill
Rolando Garza
Surendra S. Ambegaokar
Benjamin B. Gelman
Dennis L. Kolson

March 2018

Abstract Background Heme oxygenase-1 (HO-1) is a critical cytoprotective enzyme that limits oxidativ...

Heme oxygenase-1 promoter (GT)n polymorphism associates with HIV neurocognitive impairment

Garza, Rolando
Gill, Alexander J
Bastien, Brandon L
Garcia-Mesa, Yoelvis
Gruenewald, Analise L
Gelman, Benjamin B
Tsima, Billy
Gross, Robert
Letendre, Scott L
Kolson, Dennis L

May 2020

ObjectiveTo determine whether regulatory variations in the heme oxygenase-1 (HO-1) promoter (GT) n d...

Additional file 1: of Human Interleukin-34 facilitates microglia-like cell differentiation and persistent HIV-1 infection in humanized mice

Saumi Mathews (2579815)
Amanda Branch Woods (6423980)
Ikumi Katano (4112281)
Edward Makarov (6423986)
Midhun Thomas (6423989)
Howard Gendelman (3434408)
Larisa Poluektova (3827881)
Mamoru Ito (197291)
Santhi Gorantla (3827878)

March 2019

Figure S1. Integrated site of the transgene in NOG mouse genome. Figure S2. Human IL-34 expression i...

Additional file 1: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...

Additional file 2: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Figure S1. eQTL data of MS risk variants in whole blood (A) and LCLs (B). Figure S2. Identifying gen...

Additional file 4: of Human-like NSG mouse glycoproteins sialylation pattern changes the phenotype of human lymphocytes and sensitivity to HIV-1 infection

Raghubendra Dagur (6183494)
Amanda Branch-Woods (6183497)
Saumi Mathews (2579815)
Poonam Joshi (6183500)
Rolen Quadros (4030283)
Donald Harms (4030280)
Yan Cheng (149222)
Shana Miles (6183503)
Samuel Pirruccello (6183506)
Channabasavaiah Gurumurthy (4030292)
Santhi Gorantla (3827878)
Larisa Poluektova (3827881)

January 2019

Figure S4. Spleen TCRβ chain gene usage. a Individual TCRβ chain gene families usage in NSG-cmah−/− ...

Additional file 1: of The MHC locus and genetic susceptibility to autoimmune and infectious diseases

Matzaraki, Vasiliki
Magadi Gopalaiah, Vinod Kumar
Wijmenga, Cisca
Zhernakova, Sasha
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
Translational Immunology Groningen (TRIGR)

April 2017

Imputed MHC classic alleles and amino acids for infectious diseases. (XLSX 40 kb

Additional file 2: of Genetic risk for Alzheimerâs disease is concentrated in specific macrophage and microglial transcriptional networks

Katherine Tansey (4889533)
Darren Cameron (4889530)
Matthew Hill (394308)

February 2018

Table S2. Enrichment of AD-risk variants at H3K27ac peaks from Roadmap Epigenomics Consortium data. ...

Additional file 1: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution by copy number of promoter haplotype TTG and stratified by race. The scatter plots ...

Additional file 6: Figure S6. of Oncostatin M promotes excitotoxicity by inhibiting glutamate uptake in astrocytes: implications in HIV-associated neurotoxicity

Shamsudheen Moidunny (3504302)
Marco Matos (3504314)
Evelyn Wesseling (3504308)
Santanu Banerjee (101828)
David Volsky (3504311)
Rodrigo Cunha (3504305)
Paula Agostinho (1969096)
Hendrikus Boddeke (3504317)
Sabita Roy (101851)

June 2016

EcoHIV infection induces the expression of pro-inflammatory genes in primary microglia. Real-time PC...

Additional file 1: Figure S1. of IL4 induces IL6-producing M2 macrophages associated to inhibition of neuroinflammation in vitro and in vivo

Giacomo Casella (3477746)
Livia Garzetti (3477755)
Alberto Gatta (3477758)
Annamaria Finardi (635779)
Chiara Maiorino (3477752)
Francesca Ruffini (3477749)
Gianvito Martino (223053)
Luca Muzio (186715)
Roberto Furlan (223049)

June 2016

Gene expression of typical M1 and M2 markers in peritoneal macrophages stimulated in vitro. (A–D) re...

Additional file 1: of Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1

Sun Lee (333709)
Yong Park (583109)
Cheol-Hee Yoon (147189)
Kisoon Kim (427866)
Kyung-Chang Kim (4023503)

January 2019

Figure S1. Venn diagram of the differentially expressed genes (DEGs) identified from each individual...

Additional file 6: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Katherine Tansey (4889533)
Darren Cameron (4889530)
Matthew Hill (394308)

February 2018

Figure S1. Open chromatin regions (OCRs) identified in macrophages and microglia at Alzheimer’s dise...

Additional file 1: of Identification of novel genes associated with HIV-1 latency by analysis of histone modifications

Kyung-Chang Kim (4023503)
Sunyoung Lee (767697)
Junseock Son (4023500)
Younghyun Shin (4023494)
Cheol-Hee Yoon (147189)
Chun Kang (4023491)
Byeong-Sun Choi (4023497)

May 2017

Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...

Additional file 2: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of coding block haplotype GG and separated by race. The s...

Heme oxygenase-1 promoter region (GT)n polymorphism associates with increased neuroimmune activation and risk for encephalitis in HIV infection

Alexander J. Gill
Rolando Garza
Surendra S. Ambegaokar
Benjamin B. Gelman
Dennis L. Kolson

March 2018

Abstract Background Heme oxygenase-1 (HO-1) is a critical cytoprotective enzyme that limits oxidativ...

Heme oxygenase-1 promoter (GT)n polymorphism associates with HIV neurocognitive impairment

Garza, Rolando
Gill, Alexander J
Bastien, Brandon L
Garcia-Mesa, Yoelvis
Gruenewald, Analise L
Gelman, Benjamin B
Tsima, Billy
Gross, Robert
Letendre, Scott L
Kolson, Dennis L

May 2020

ObjectiveTo determine whether regulatory variations in the heme oxygenase-1 (HO-1) promoter (GT) n d...

Additional file 1: of Human Interleukin-34 facilitates microglia-like cell differentiation and persistent HIV-1 infection in humanized mice

Saumi Mathews (2579815)
Amanda Branch Woods (6423980)
Ikumi Katano (4112281)
Edward Makarov (6423986)
Midhun Thomas (6423989)
Howard Gendelman (3434408)
Larisa Poluektova (3827881)
Mamoru Ito (197291)
Santhi Gorantla (3827878)

March 2019

Figure S1. Integrated site of the transgene in NOG mouse genome. Figure S2. Human IL-34 expression i...

Additional file 1: of “Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”

Sheetal Verma (5225192)
Peicheng Du (101870)
Damalie Nakanjako (317164)
Sabine Hermans (741528)
Jessica Briggs (507902)
Lydia Nakiyingi (441873)
Jerrold Ellner (498928)
Yukari Manabe (358315)
Padmini Salgame (421744)

May 2018

Figure S1. A heatmap of top 50 genes differentially expressed between TB-HIV and HIV. Heat map showi...

Additional file 2: of Evidence from genome wide association studies implicates reduced control of Epstein-Barr virus infection in multiple sclerosis susceptibility

Ali Afrasiabi (6652580)
Grant Parnell (228200)
Nicole Fewings (6652583)
Stephen Schibeci (753421)
Monica Basuki (787103)
Ramya Chandramohan (6652586)
Yuan Zhou (179597)
Bruce Taylor (4417426)
David Brown (71846)
Sanjay Swaminathan (392322)
Fiona McKay (753423)
Graeme Stewart (208243)
David Booth (228203)

April 2019

Figure S1. eQTL data of MS risk variants in whole blood (A) and LCLs (B). Figure S2. Identifying gen...

Additional file 4: of Human-like NSG mouse glycoproteins sialylation pattern changes the phenotype of human lymphocytes and sensitivity to HIV-1 infection

Raghubendra Dagur (6183494)
Amanda Branch-Woods (6183497)
Saumi Mathews (2579815)
Poonam Joshi (6183500)
Rolen Quadros (4030283)
Donald Harms (4030280)
Yan Cheng (149222)
Shana Miles (6183503)
Samuel Pirruccello (6183506)
Channabasavaiah Gurumurthy (4030292)
Santhi Gorantla (3827878)
Larisa Poluektova (3827881)

January 2019

Figure S4. Spleen TCRβ chain gene usage. a Individual TCRβ chain gene families usage in NSG-cmah−/− ...

Additional file 1: of The MHC locus and genetic susceptibility to autoimmune and infectious diseases

Matzaraki, Vasiliki
Magadi Gopalaiah, Vinod Kumar
Wijmenga, Cisca
Zhernakova, Sasha
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
Translational Immunology Groningen (TRIGR)

April 2017

Imputed MHC classic alleles and amino acids for infectious diseases. (XLSX 40 kb

Additional file 2: of Genetic risk for Alzheimerâs disease is concentrated in specific macrophage and microglial transcriptional networks

Katherine Tansey (4889533)
Darren Cameron (4889530)
Matthew Hill (394308)

February 2018

Table S2. Enrichment of AD-risk variants at H3K27ac peaks from Roadmap Epigenomics Consortium data. ...

Additional file 1: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution by copy number of promoter haplotype TTG and stratified by race. The scatter plots ...

Additional file 6: Figure S6. of Oncostatin M promotes excitotoxicity by inhibiting glutamate uptake in astrocytes: implications in HIV-associated neurotoxicity

Shamsudheen Moidunny (3504302)
Marco Matos (3504314)
Evelyn Wesseling (3504308)
Santanu Banerjee (101828)
David Volsky (3504311)
Rodrigo Cunha (3504305)
Paula Agostinho (1969096)
Hendrikus Boddeke (3504317)
Sabita Roy (101851)

June 2016

EcoHIV infection induces the expression of pro-inflammatory genes in primary microglia. Real-time PC...

Additional file 1: Figure S1. of IL4 induces IL6-producing M2 macrophages associated to inhibition of neuroinflammation in vitro and in vivo

Giacomo Casella (3477746)
Livia Garzetti (3477755)
Alberto Gatta (3477758)
Annamaria Finardi (635779)
Chiara Maiorino (3477752)
Francesca Ruffini (3477749)
Gianvito Martino (223053)
Luca Muzio (186715)
Roberto Furlan (223049)

June 2016

Gene expression of typical M1 and M2 markers in peritoneal macrophages stimulated in vitro. (A–D) re...

Additional file 1: of Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1

Sun Lee (333709)
Yong Park (583109)
Cheol-Hee Yoon (147189)
Kisoon Kim (427866)
Kyung-Chang Kim (4023503)

January 2019

Figure S1. Venn diagram of the differentially expressed genes (DEGs) identified from each individual...

Additional file 6: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Katherine Tansey (4889533)
Darren Cameron (4889530)
Matthew Hill (394308)

February 2018

Figure S1. Open chromatin regions (OCRs) identified in macrophages and microglia at Alzheimer’s dise...

Additional file 1: of Identification of novel genes associated with HIV-1 latency by analysis of histone modifications

Kyung-Chang Kim (4023503)
Sunyoung Lee (767697)
Junseock Son (4023500)
Younghyun Shin (4023494)
Cheol-Hee Yoon (147189)
Chun Kang (4023491)
Byeong-Sun Choi (4023497)

May 2017

Chromosomal distribution of H3K4me3 binding sites in HIV-1 latently infected cells. Enrichment patte...

Additional file 2: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of coding block haplotype GG and separated by race. The s...

Additional file 1: of Heme oxygenase-1 promoter region (GT)n polymorphism associates with increased neuroimmune activation and risk for encephalitis in HIV infection

Abstract

Extracted data

Additional file 1: of Heme oxygenase-1 promoter region (GT)n polymorphism associates with increased neuroimmune activation and risk for encephalitis in HIV infection

Abstract

Extracted data

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