Empirical significance — Percentage of genome-wide transmission test false positives in 10,000 datasets with LD.

<p>Proportion of 10,000 datasets simulated under the null hypothesis of no genotyping error and in the presence of LD such that . Columns 2 through 5 display results for various chip sizes when generating minor allele frequencies from a Uniform (0.1,0.5) distribution. Columns 6 through 9 display analogous results when generating minor allele frequencies from a Beta (2,8) distribution. Each row depicts results corresponding to a distinct genotyping error model from <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000572#pgen-1000572-g001" target="_blank">Figure 1</a>.