<p>The branch lengths, in the expected number of nucleotide substitutions per codon, are estimated under the free-ratios model <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003746#pone.0003746-Yang5" target="_blank">[18]</a> from analysis of the BRCA1 genes, while the estimated <i>ω</i> ratios for branches are shown along the branches.</p
<p>The topology and branch lengths shown here are based on concatenated alignments of coding exons (...
Abstract Background The availability of abundant sequence data from key model organisms has made lar...
<p>Hu = <u>Hu</u>man (<i>Homo sapiens</i>), Fr = Western Clawed <u>Fr</u>og (<i>Xenopus tropicalis</...
<p>The branch model analysis assuming different ω ratios in the shallow branches (a); and the branch...
<p>The ω values for individual branch according to the free-ratio model are shown.</p
<div><p>Trees and ω (Ka/Ka) ratios were computed using the ML method for codons implemented in PAML....
<p>The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different lo...
<div><p>Horizontal bars indicate the relative rates of change among taxa for each family (where rate...
Comparative sequence analyses on a collection of carefully chosen mammalian genomes could facilitate...
Branch lengths are proportional to rates of synonymous (left panel) and nonsynonymous (right panel) ...
<p>(a) Estimates of relative substitution rates (<i>μ<sub>R</sub></i>) and their 95% higest posterio...
<p>Clade posterior probabilities are indicated on branches (*>90%; **>98%). Symbols on the clades ar...
<p>The topology and branch lengths shown here are based on concatenated alignments of coding exons (...
Abstract Background The availability of abundant sequence data from key model organisms has made lar...
<p>Hu = <u>Hu</u>man (<i>Homo sapiens</i>), Fr = Western Clawed <u>Fr</u>og (<i>Xenopus tropicalis</...
<p>The branch model analysis assuming different ω ratios in the shallow branches (a); and the branch...
<p>The ω values for individual branch according to the free-ratio model are shown.</p
<div><p>Trees and ω (Ka/Ka) ratios were computed using the ML method for codons implemented in PAML....
<p>The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different lo...
<div><p>Horizontal bars indicate the relative rates of change among taxa for each family (where rate...
Comparative sequence analyses on a collection of carefully chosen mammalian genomes could facilitate...
Branch lengths are proportional to rates of synonymous (left panel) and nonsynonymous (right panel) ...
<p>(a) Estimates of relative substitution rates (<i>μ<sub>R</sub></i>) and their 95% higest posterio...
<p>Clade posterior probabilities are indicated on branches (*>90%; **>98%). Symbols on the clades ar...
<p>The topology and branch lengths shown here are based on concatenated alignments of coding exons (...
Abstract Background The availability of abundant sequence data from key model organisms has made lar...
<p>Hu = <u>Hu</u>man (<i>Homo sapiens</i>), Fr = Western Clawed <u>Fr</u>og (<i>Xenopus tropicalis</...
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