<p>2166 characterized genes from the <i>E. coli</i> ORFeome (dark line) are enriched in common codons as compared to 2325 genes annotated as unclassified, hypothetical, or unknown function (grey line). The median of each curve is denoted with an asterisk. %MinMax values were calculated using the codon usage frequencies from the entire ORFeome, with a sliding window of 18 codons.</p
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...
<p>For each species, genes have been split into eight categories of expression (based on RPKM) of sa...
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...
<p>(A) %MinMax was applied to the P22 tailspike gene, using a sliding window size of 18 codons and t...
<p>Shown is the codon distribution of all merged protein-coding genes for all considered species (fo...
<div><p>(A) Effective number of codons (ENc; a measure of overall codon bias) for each predicted ORF...
<p>Shown are the absolute frequencies of naORF lengths for the genome of <i>E. coli</i> MC4100 (NC_0...
The geography of codon bias distributions over prokaryotic genomes and its impact upon chromosomal o...
<p>For each codon, three <i>E. coli</i> absolute codon frequencies are tabulated using codon usage d...
<p>Diversity of dN and dS for each orthologous gene cluster was computed by averaging all pairwise e...
Gene codon optimization may be impaired by the misinterpretation of frequency and optimality of codo...
In this study we have focused on the codon usage bias in E. coli, at two different levels, the codon...
AbstractThe relation between codon usage and gene-expression levels is an intensively investigated a...
<p>The assumed cellular location is noted as follows: C, chloroplast minicircles; M, mitochrondrium;...
Synonymous codon usage patterns of bacteriophage and host genomes were compared. Two indexes, G + C ...
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...
<p>For each species, genes have been split into eight categories of expression (based on RPKM) of sa...
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...
<p>(A) %MinMax was applied to the P22 tailspike gene, using a sliding window size of 18 codons and t...
<p>Shown is the codon distribution of all merged protein-coding genes for all considered species (fo...
<div><p>(A) Effective number of codons (ENc; a measure of overall codon bias) for each predicted ORF...
<p>Shown are the absolute frequencies of naORF lengths for the genome of <i>E. coli</i> MC4100 (NC_0...
The geography of codon bias distributions over prokaryotic genomes and its impact upon chromosomal o...
<p>For each codon, three <i>E. coli</i> absolute codon frequencies are tabulated using codon usage d...
<p>Diversity of dN and dS for each orthologous gene cluster was computed by averaging all pairwise e...
Gene codon optimization may be impaired by the misinterpretation of frequency and optimality of codo...
In this study we have focused on the codon usage bias in E. coli, at two different levels, the codon...
AbstractThe relation between codon usage and gene-expression levels is an intensively investigated a...
<p>The assumed cellular location is noted as follows: C, chloroplast minicircles; M, mitochrondrium;...
Synonymous codon usage patterns of bacteriophage and host genomes were compared. Two indexes, G + C ...
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...
<p>For each species, genes have been split into eight categories of expression (based on RPKM) of sa...
Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differentl...