<p>A graphical representation of the log2 transform of the difference between inconsistency scores. A green box indicates that the sample on the <i>y</i>-axis is more consistent with anaerobic growth than the sample on the <i>x</i>-axis. Red boxes indicate the opposite. Differences that do not meet p<0.05 are left blank. The shade of red or green quantifies the log2 of the difference in inconsistency scores. The position of green and red blocks shows that in nearly all cases that are statistically significant, gene expression data for strains grown without oxygen is more consistent with efficient anaerobic growth than strains grown with oxygen.</p
The expression levels (both predicted and observed) are indicated in yellow to blue scale (low to hi...
<p>(A) For each method, the mean negative log likelihood of the data. “Training” means each model is...
<p>The normalized consistency score for an <i>E. coli</i> strain designed to produce lactate indicat...
<p>A graphical representation of the log2 transform of the difference between inconsistency scores. ...
<p>Normalized consistency scores are computed directly from the inconsistency scores, as described i...
<p>Respiration rates presented on a bar graph showing pairwise comparisons across all treatments, wi...
<p>(A) Biolog AUC as measured for the D-glucose on Biolog plates. The evolved strains have a lower A...
<p>SD = standard deviation, NF = NormFinder</p><p>Descriptive statistics and stability values of can...
<p>Correlations between cell numbers (log N/N<sub>0</sub>) reached up 24 h of incubation (Y-axis) an...
<p>This figure demonstrates the same result as <a href="http://www.ploscompbiol.org/article/info:doi...
<p>Measurements: “ExpA” (grey crosses) and “ExpB” (black crosses). Calculation (dotted line): course...
<p>A) Time-course of viable cell density for cells grown in different fluence UV-treated nitrogen-sa...
<p>The correlation between the percentage of oxygen in the input gas and the acetate production of t...
A) Log2(fold change) in mRNA and protein for cells grown ±O2, on glucose (black) or xylose (colored)...
<p>Strains were cultured with constant 0.02% O<sub>2</sub> gas mixture sparging followed by a switch...
The expression levels (both predicted and observed) are indicated in yellow to blue scale (low to hi...
<p>(A) For each method, the mean negative log likelihood of the data. “Training” means each model is...
<p>The normalized consistency score for an <i>E. coli</i> strain designed to produce lactate indicat...
<p>A graphical representation of the log2 transform of the difference between inconsistency scores. ...
<p>Normalized consistency scores are computed directly from the inconsistency scores, as described i...
<p>Respiration rates presented on a bar graph showing pairwise comparisons across all treatments, wi...
<p>(A) Biolog AUC as measured for the D-glucose on Biolog plates. The evolved strains have a lower A...
<p>SD = standard deviation, NF = NormFinder</p><p>Descriptive statistics and stability values of can...
<p>Correlations between cell numbers (log N/N<sub>0</sub>) reached up 24 h of incubation (Y-axis) an...
<p>This figure demonstrates the same result as <a href="http://www.ploscompbiol.org/article/info:doi...
<p>Measurements: “ExpA” (grey crosses) and “ExpB” (black crosses). Calculation (dotted line): course...
<p>A) Time-course of viable cell density for cells grown in different fluence UV-treated nitrogen-sa...
<p>The correlation between the percentage of oxygen in the input gas and the acetate production of t...
A) Log2(fold change) in mRNA and protein for cells grown ±O2, on glucose (black) or xylose (colored)...
<p>Strains were cultured with constant 0.02% O<sub>2</sub> gas mixture sparging followed by a switch...
The expression levels (both predicted and observed) are indicated in yellow to blue scale (low to hi...
<p>(A) For each method, the mean negative log likelihood of the data. “Training” means each model is...
<p>The normalized consistency score for an <i>E. coli</i> strain designed to produce lactate indicat...