<p>Estimated values of <i>k̂</i> and confidence interval coverage for NB datasets. 10,000 datasets were simulated as described in Section 2.1.1 of the text, using mean <i>m</i>, dispersion parameter <i>k</i>, and sample size <i>n</i> as shown. Boxes show the median and interquartile range (IQR) of 10,000 resulting ML estimates of <i>k̂</i>, and whiskers show the 5<sup>th</sup> and 95<sup>th</sup> percentile values. Numbers to the right of each subplot show the percentage of simulations for which the true value of <i>k</i> was outside (below (CI overestimate)/above (CI underestimate) for the numbers <i>y</i>/<i>z</i>, respectively) the 90% confidence interval estimated for <i>k̂</i> The vertical line in each subplot shows the true value of <...
The error between simulated coverage probability and nominal coverage probability of the 90% two-sid...
The error between simulated coverage probability and nominal coverage probability of the 95% two-sid...
<p>The simulated response distributions are (left to right): NB1, NB2, NB2 with outliers and NB2 wit...
<p>Estimated values of <i>k̂</i> and confidence interval coverage for NB datasets with uniform under...
<p>Estimated values of <i>k̂</i> and confidence interval coverage for NB datasets with under-reporti...
<p>The empirical confidence regions for a range of probability levels ( = 0.005 to 0.5) are construc...
<p>The empirical confidence regions for a range of probability levels ( = 0.005 to 0.5) are construc...
<p>Proportion of 95% confidence intervals that covered the true NO parameter value from 10,000 simul...
The data is a simulation of confidence limits, coverage probabilities, average difference from actua...
<p>For each simulation setting, coverage was assessed by tracking the percentage of simulations prod...
<p>Estimated values of (a) <i>k̂</i> and (b) <i>m̂</i> for outbreak datasets generated by branching ...
<p>In the simulation, the dispersion is simulated according to an NB2 (left panel) or an NBQ (right ...
Scenario descriptions and parameter combinations are adapted directly from Ioannidis [1]. The remain...
<p>Each dot represents a simulation with a particular set of parameters. The colors indicate the num...
<p><i>Notes</i>: For the four QTL positions (dense marker region to sparse marker region <i>Q<sub>1<...
The error between simulated coverage probability and nominal coverage probability of the 90% two-sid...
The error between simulated coverage probability and nominal coverage probability of the 95% two-sid...
<p>The simulated response distributions are (left to right): NB1, NB2, NB2 with outliers and NB2 wit...
<p>Estimated values of <i>k̂</i> and confidence interval coverage for NB datasets with uniform under...
<p>Estimated values of <i>k̂</i> and confidence interval coverage for NB datasets with under-reporti...
<p>The empirical confidence regions for a range of probability levels ( = 0.005 to 0.5) are construc...
<p>The empirical confidence regions for a range of probability levels ( = 0.005 to 0.5) are construc...
<p>Proportion of 95% confidence intervals that covered the true NO parameter value from 10,000 simul...
The data is a simulation of confidence limits, coverage probabilities, average difference from actua...
<p>For each simulation setting, coverage was assessed by tracking the percentage of simulations prod...
<p>Estimated values of (a) <i>k̂</i> and (b) <i>m̂</i> for outbreak datasets generated by branching ...
<p>In the simulation, the dispersion is simulated according to an NB2 (left panel) or an NBQ (right ...
Scenario descriptions and parameter combinations are adapted directly from Ioannidis [1]. The remain...
<p>Each dot represents a simulation with a particular set of parameters. The colors indicate the num...
<p><i>Notes</i>: For the four QTL positions (dense marker region to sparse marker region <i>Q<sub>1<...
The error between simulated coverage probability and nominal coverage probability of the 90% two-sid...
The error between simulated coverage probability and nominal coverage probability of the 95% two-sid...
<p>The simulated response distributions are (left to right): NB1, NB2, NB2 with outliers and NB2 wit...