<p>Then 200,000 barcoded reads of length 18 are generated and errors are introduced with 2% probability, only substitutions errors are allowed. With k-mer length of 6, all reads can be demultiplexed correctly in less than half a minute. Benchmarking is performed in an 8-core machine with 24 Gb memory.</p
Linker sequences are trimmed with Cutadapt (colors represent distinct barcodes). Clustering is perfo...
<p>BCH barcodes of size <i>N</i> ≤ 25 constrained to accomplish <i>M</i> ≥ 24 and <i>p</i><sub><i>u<...
Abstract Background Systems biology increasingly relies on deep sequencing with combinatorial index ...
<p>Then 200,000 barcoded reads of length 18 are generated and errors are introduced with 2% probabil...
We consider the design and evaluation of short barcodes, with a length between six and eight nucleot...
We consider the design and evaluation of short barcodes, with a length between six and eight nucleot...
Applying a cutoff for barcode abundance eliminates most recall of longer barcodes that were not inte...
<p>BY barcodes of size <i>N</i> over a <i>QSC</i> model where mismatch errors occur with probability...
<p>Random barcodes of size <i>N</i> with minimum edit distance [<a href="http://www.plosone.org/arti...
Multiplexing is of vital importance for utilizing the full potential of next generation sequencing t...
<p>LDPC barcodes of size <i>N</i> ≤ 25 constrained to accomplish <i>M</i> ≥ 24 and <i>p</i><sub><i>u...
<p>Simulated barcoded Rep-seq libraries with various amplification error rates for repertoire from d...
Multiplexing is of vital importance for utilizing the full potential of next generation sequencing t...
<p>Each codeword symbol <i>c</i><sub><i>i</i></sub>, <i>i</i> = 1, …, 12, is constrained by exactly ...
Background: DNA barcodes are short unique sequences used to label DNA or RNA-derived samples in mult...
Linker sequences are trimmed with Cutadapt (colors represent distinct barcodes). Clustering is perfo...
<p>BCH barcodes of size <i>N</i> ≤ 25 constrained to accomplish <i>M</i> ≥ 24 and <i>p</i><sub><i>u<...
Abstract Background Systems biology increasingly relies on deep sequencing with combinatorial index ...
<p>Then 200,000 barcoded reads of length 18 are generated and errors are introduced with 2% probabil...
We consider the design and evaluation of short barcodes, with a length between six and eight nucleot...
We consider the design and evaluation of short barcodes, with a length between six and eight nucleot...
Applying a cutoff for barcode abundance eliminates most recall of longer barcodes that were not inte...
<p>BY barcodes of size <i>N</i> over a <i>QSC</i> model where mismatch errors occur with probability...
<p>Random barcodes of size <i>N</i> with minimum edit distance [<a href="http://www.plosone.org/arti...
Multiplexing is of vital importance for utilizing the full potential of next generation sequencing t...
<p>LDPC barcodes of size <i>N</i> ≤ 25 constrained to accomplish <i>M</i> ≥ 24 and <i>p</i><sub><i>u...
<p>Simulated barcoded Rep-seq libraries with various amplification error rates for repertoire from d...
Multiplexing is of vital importance for utilizing the full potential of next generation sequencing t...
<p>Each codeword symbol <i>c</i><sub><i>i</i></sub>, <i>i</i> = 1, …, 12, is constrained by exactly ...
Background: DNA barcodes are short unique sequences used to label DNA or RNA-derived samples in mult...
Linker sequences are trimmed with Cutadapt (colors represent distinct barcodes). Clustering is perfo...
<p>BCH barcodes of size <i>N</i> ≤ 25 constrained to accomplish <i>M</i> ≥ 24 and <i>p</i><sub><i>u<...
Abstract Background Systems biology increasingly relies on deep sequencing with combinatorial index ...
DOI
Add to ORKG