Experimental scheme of the ChIP-chips Cc1, Cc2 and Cc3 in combination with microarray Ma(PLZF; K).

The expanded motif is important for DNA binding by vPIC.

Divya Nandakumar (540329)
Britt Glaunsinger (213045)

May 2019

(A) Schematic of the transient ChIP assay. iSLK-WT or iSLK-HAORF34 cells reactivated with doxycyclin...

ChIP Display: novel method for identification of genomic targets of transcription factors

Artem Barski
Baruch Frenkel

January 2004

Novel protein–DNA interactions in mammalian cells are traditionally discovered in the course of prom...

RNAP-II participates in the anchoring of Orc1p, Orc2p and Cdc6p to the ARS.

Maria D. Mayan (106182)

January 2013

(a) 2D gel of the RIs corresponding to an asynchronous culture (rpb1–1 strain) that...

Topoisomerase activity is required for RNA polymerase II recruitment.

Morten Roedgaard (109508)
Jacob Fredsoe (109506)
Jakob Madsen Pedersen (109504)
Lotte Bjergbaek (109526)
Anni Hangaard Andersen (109531)

July 2015

ChIP analysis of RNA polymerase II enrichment in GAL gene promoters of wild type and to...

List of genes on which pol II as well as PLZF were recruited by PLZF overexpression and which additionally exhibited an increased mRNA level induced by PLZF overexpression (Cc1\Cc3 ∩ Cc2 ∩ Cc4\Cc5 ∩ Ma(PLZF; K).

Daniela Zaade (213221)
Jennifer Schmitz (385250)
Eileen Benke (385251)
Sabrina Klare (385252)
Kerstin Seidel (385253)
Sebastian Kirsch (385254)
Petra Goldin-Lang (385255)
Frank S. Zollmann (385256)
Thomas Unger (50174)
Heiko Funke-Kaiser (385257)

March 2013

The presence of the respective genes in the Cc6 results dataset and the presence of PLZF cis-elem...

Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex.

Jasiak, A.
Hartmann, H.
Karakasili, E.
Kalocsay, M.
Flatley, A.
Kremmer, E.
Strässer, K.
Martin, D.
Söding, J.
Cramer, P.

September 2008

Yeast RNA polymerase (Pol) II consists of a 10-subunit core enzyme and the Rpb4/7 subcomplex, which ...

Identification of protein complexes by ChIP analysis demonstrates cell-specific binding of Sp1 and active RNA polymerase II to the Ccna1 promoter as well as an enrichment of H3K27me3.

Sunil K. Panigrahi (124819)
Ana Vasileva (18008)
Debra J. Wolgemuth (124823)

October 2012

Antibodies to Sp1, H3K27me3 or the corresponding IgG control were used to immunoprecipitate prote...

Examples of effects of cohesin and PRC1 on each other's binding, and effects of PRC1 depletion on Pol II occupancy in BG3 cells.

Cheri A. Schaaf (144616)
Ziva Misulovin (262237)
Maria Gause (144614)
Amanda Koenig (392624)
David W. Gohara (361290)
Audrey Watson (392625)
Dale Dorsett (63431)

June 2013

ChIP-chip tracks of Rad21, Polycomb (Pc, PRC1), Rpb3 (total Pol II), or Ser2P Pol II (elongating ...

RNA polymerase II recruitment to the Cis and Osm promoters is impeded in Ba/F3 cells treated with α-Br-TMC.

Sophia Pinz (529821)
Samy Unser (529822)
Susanne Brueggemann (529823)
Elisabeth Besl (529824)
Nafisah Al-Rifai (529825)
Hermina Petkes (529826)
Sabine Amslinger (529827)
Anne Rascle (529828)

March 2014

Ba/F3 cells were pre-treated 30 minutes with 0.2 µM TSA or 10 µM α-Br-TMC before being stimulated...

CORRESPONDENCE Open Access Non-canonical protein-DNA interactions identified by ChIP are not artifacts

Joseph T Wade

September 2016

Background: ChIP-chip and ChIP-seq are widely used methods to map protein-DNA interactions on a geno...

Abundance of the largest subunit of RNA polymerase II in the nucleus is regulated by nucleo-cytoplasmic shuttling

Custódio, Noélia
Antoniou, Michael
Carmo-Fonseca, Maria

January 2006

ChIP-chip

Kim, Tae Hoon
Dekker, Job

May 2018

ChIP-chip can be used to analyze protein-DNA interactions in a region-wide and genome-wide manner. D...

Distinct TALE site binding preferences for PREP1, PBX2, HoxA9 and IRF1 in the CCL2 promoter.

Stephen H. Page (348394)
Edward K. Wright Jr (5652985)
Lucio Gama (139021)
Janice E. Clements (139029)

February 2013

ChIP results from U87-MG cells transfected with appropriate plasmids (as described above) and act...

Interplay between polycomb repression and RNA polymerase II regulation genome-wide in murine ES cells

Pombo, Ana
Domingos de Jesus, Ines de Santiago

January 2011

Gene regulation is a complex process that involves recruitment of transcription machinery, chromatin...

Chromatin immunoprecipitation of transcription factors and histone modifications in Comma-Dβ mammary epithelial cells

Holly Holliday
Amanda Khoury
Alexander Swarbrick

June 2021

Summary: Chromatin immunoprecipitation (ChIP) is used to study interactions between proteins and DNA...

The expanded motif is important for DNA binding by vPIC.

Divya Nandakumar (540329)
Britt Glaunsinger (213045)

May 2019

(A) Schematic of the transient ChIP assay. iSLK-WT or iSLK-HAORF34 cells reactivated with doxycyclin...

ChIP Display: novel method for identification of genomic targets of transcription factors

Artem Barski
Baruch Frenkel

January 2004

Novel protein–DNA interactions in mammalian cells are traditionally discovered in the course of prom...

RNAP-II participates in the anchoring of Orc1p, Orc2p and Cdc6p to the ARS.

Maria D. Mayan (106182)

January 2013

(a) 2D gel of the RIs corresponding to an asynchronous culture (rpb1–1 strain) that...

Topoisomerase activity is required for RNA polymerase II recruitment.

Morten Roedgaard (109508)
Jacob Fredsoe (109506)
Jakob Madsen Pedersen (109504)
Lotte Bjergbaek (109526)
Anni Hangaard Andersen (109531)

July 2015

ChIP analysis of RNA polymerase II enrichment in GAL gene promoters of wild type and to...

List of genes on which pol II as well as PLZF were recruited by PLZF overexpression and which additionally exhibited an increased mRNA level induced by PLZF overexpression (Cc1\Cc3 ∩ Cc2 ∩ Cc4\Cc5 ∩ Ma(PLZF; K).

Daniela Zaade (213221)
Jennifer Schmitz (385250)
Eileen Benke (385251)
Sabrina Klare (385252)
Kerstin Seidel (385253)
Sebastian Kirsch (385254)
Petra Goldin-Lang (385255)
Frank S. Zollmann (385256)
Thomas Unger (50174)
Heiko Funke-Kaiser (385257)

March 2013

The presence of the respective genes in the Cc6 results dataset and the presence of PLZF cis-elem...

Genome-associated RNA polymerase II includes the dissociable Rpb4/7 subcomplex.

Jasiak, A.
Hartmann, H.
Karakasili, E.
Kalocsay, M.
Flatley, A.
Kremmer, E.
Strässer, K.
Martin, D.
Söding, J.
Cramer, P.

September 2008

Yeast RNA polymerase (Pol) II consists of a 10-subunit core enzyme and the Rpb4/7 subcomplex, which ...

Identification of protein complexes by ChIP analysis demonstrates cell-specific binding of Sp1 and active RNA polymerase II to the Ccna1 promoter as well as an enrichment of H3K27me3.

Sunil K. Panigrahi (124819)
Ana Vasileva (18008)
Debra J. Wolgemuth (124823)

October 2012

Antibodies to Sp1, H3K27me3 or the corresponding IgG control were used to immunoprecipitate prote...

Examples of effects of cohesin and PRC1 on each other's binding, and effects of PRC1 depletion on Pol II occupancy in BG3 cells.

Cheri A. Schaaf (144616)
Ziva Misulovin (262237)
Maria Gause (144614)
Amanda Koenig (392624)
David W. Gohara (361290)
Audrey Watson (392625)
Dale Dorsett (63431)

June 2013

ChIP-chip tracks of Rad21, Polycomb (Pc, PRC1), Rpb3 (total Pol II), or Ser2P Pol II (elongating ...

RNA polymerase II recruitment to the Cis and Osm promoters is impeded in Ba/F3 cells treated with α-Br-TMC.

Sophia Pinz (529821)
Samy Unser (529822)
Susanne Brueggemann (529823)
Elisabeth Besl (529824)
Nafisah Al-Rifai (529825)
Hermina Petkes (529826)
Sabine Amslinger (529827)
Anne Rascle (529828)

March 2014

Ba/F3 cells were pre-treated 30 minutes with 0.2 µM TSA or 10 µM α-Br-TMC before being stimulated...

CORRESPONDENCE Open Access Non-canonical protein-DNA interactions identified by ChIP are not artifacts

Joseph T Wade

September 2016

Background: ChIP-chip and ChIP-seq are widely used methods to map protein-DNA interactions on a geno...

Abundance of the largest subunit of RNA polymerase II in the nucleus is regulated by nucleo-cytoplasmic shuttling

Custódio, Noélia
Antoniou, Michael
Carmo-Fonseca, Maria

January 2006

ChIP-chip

Kim, Tae Hoon
Dekker, Job

May 2018

ChIP-chip can be used to analyze protein-DNA interactions in a region-wide and genome-wide manner. D...

Distinct TALE site binding preferences for PREP1, PBX2, HoxA9 and IRF1 in the CCL2 promoter.

Stephen H. Page (348394)
Edward K. Wright Jr (5652985)
Lucio Gama (139021)
Janice E. Clements (139029)

February 2013

ChIP results from U87-MG cells transfected with appropriate plasmids (as described above) and act...

Interplay between polycomb repression and RNA polymerase II regulation genome-wide in murine ES cells

Pombo, Ana
Domingos de Jesus, Ines de Santiago

January 2011

Gene regulation is a complex process that involves recruitment of transcription machinery, chromatin...

Chromatin immunoprecipitation of transcription factors and histone modifications in Comma-Dβ mammary epithelial cells

Holly Holliday
Amanda Khoury
Alexander Swarbrick

June 2021

Summary: Chromatin immunoprecipitation (ChIP) is used to study interactions between proteins and DNA...

The expanded motif is important for DNA binding by vPIC.

Divya Nandakumar (540329)
Britt Glaunsinger (213045)

May 2019

(A) Schematic of the transient ChIP assay. iSLK-WT or iSLK-HAORF34 cells reactivated with doxycyclin...

ChIP Display: novel method for identification of genomic targets of transcription factors

Artem Barski
Baruch Frenkel

January 2004

Novel protein–DNA interactions in mammalian cells are traditionally discovered in the course of prom...

RNAP-II participates in the anchoring of Orc1p, Orc2p and Cdc6p to the ARS.

Maria D. Mayan (106182)

January 2013

(a) 2D gel of the RIs corresponding to an asynchronous culture (rpb1–1 strain) that...

Experimental scheme of the ChIP-chips Cc1, Cc2 and Cc3 in combination with microarray Ma(PLZF; K).

Abstract

Extracted data

Experimental scheme of the ChIP-chips Cc1, Cc2 and Cc3 in combination with microarray Ma(PLZF; K).

Abstract

Extracted data

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