Bootstrapping of the sample clusters from <b>Figure 3</b>.
- Ron Stewart (114673)
- Cynthia Alexander Rascón (386638)
- Shulan Tian (386639)
- Jeff Nie (5707)
- Chris Barry (374156)
- Li-Fang Chu (386640)
- Hamisha Ardalani (386641)
- Ryan J. Wagner (386642)
- Mitchell D. Probasco (386643)
- Jennifer M. Bolin (386644)
- Ning Leng (386645)
- Srikumar Sengupta (259261)
- Michael Volkmer (4850)
- Bianca Habermann (4847)
- Elly M. Tanaka (228562)
- James A. Thomson (386646)
- Colin N. Dewey (257084)
Publication date
March 2013
DOIAbstract
<p>To assess the uncertainty in hierarchical cluster analysis over samples, bootstrap resampling (10,000 iterations) was applied via the R package Pvclust <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002936#pcbi.1002936-Suzuki1" target="_blank">[26]</a>. The uncentered Pearson correlation is used as the distance metric with average linkage. The numbers above each edge show the probability of nodes below that edge occurring as a cluster in resampled trees, via ordinary bootstrap resampling (BP, green) or multiscale bootstrap resampling (AU, red). See <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002936#s4" target="_blank">Materials and Methods</a> for details on bootstrapping.</p
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