Gene expression responses in the hypothesized chlorophyll a and non-mevalonate pathways in <i>P. tricornutum</i>.

<p>Colored squares indicate the regulation pattern of genes encoding putative enzymes functioning in the two pathways after dark treatment for 48 h (D48) and re-exposure to white light (WL) for 0.5, 6 and 24 h. Continous white light (CWL) were control conditions. Squares with a diagonal line inside indicate genes with an expression ratio greater than +/−0.5 that are not significantly regulated. The asterisk marking the expression pattern of subunit I of Mg-chelatase (MgCh) indicates that the gene is chloroplast encoded, and that the expression ratios was assessed by qRT-PCR instead of microarray analysis. The scale on the right represents gene expression ratio values, log₂ transformed. The gene encoding Mg-protoporphyrin IX monomethyl ester cyclase responsible for converting Mg-protoporphyrin IX monomethyl ester to divinyl protochlorophyllide <i>a</i> in higher plants <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058722#pone.0058722-Tanaka1" target="_blank">[108]</a> is absent in <i>P. tricornutum</i>, and this step is marked with a question mark in the figure. The abbreviations used are: GLURS: glutamyl-tRNA synthetase; HEMA: glutamyl-tRNA reductase; HEML: glutamate-1-semialdehyde 2,1-aminomutase, HEMB: porphobilinogen synthase; HEMC: hydroxymethylbilane synthase; HEMD: uroporphyrinogen-III synthase; HEME: uroporphyrinogen decarboxylase; HEMF: coproporphyrinogen III oxidase; PPO: protoporphyrinogen oxidase; MgCh: magnesium chelatase (comprising of subunits H, D and I); CHLM: Mg-protoporphyrin IX methyl transferase; POR: protochlorophyllide oxidoreductase; DVR: divinyl protochlorophyllide a 8-vinyl reductase; CHLG: chlorophyll synthase; DXS: deoxyxylulose-5-phosphate synthase; DXR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; ISPD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; CMK: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; ISPF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; HDS: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; HDR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; FDPS: farnesyl diphosphate synthase; GGPS: geranylgeranyl pyrophosphate synthase; IDI: isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerise; CHLP: geranylgeranyl reductase.