Campylobacter Sequencing Results at Species-Level by Number of Species per Subject.

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two biological replicates for the protocol presented here (V2).

Rose Ruiz Daniels (13318728)
Richard S. Taylor (7327604)
Ross Dobie (11354106)
Sarah Salisbury (16949310)
James J. Furniss (5993546)
Emily Clark (586426)
Daniel J. Macqueen (6947858)
Diego Robledo (3413408)

September 2023

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two b...

Sequencing results of the 12 specimens separately performed by two methods.

Linxiang Chen (523347)
Ying Cai (22305)
Guangbiao Zhou (523348)
Xiaojun Shi (523349)
Jianhui Su (523350)
Guanwu Chen (523351)
Kun Lin (278765)

February 2014

Sequencing results of the 12 specimens separately performed by two methods.</p

Human Campylobacter strains per clonal complex and sequence type assigned with MLST.

Lapo Mughini Gras (284811)
Joost H. Smid (284810)
Jaap A. Wagenaar (103922)
Albert G. de Boer (284812)
Arie H. Havelaar (170779)
Ingrid H. M. Friesema (312961)
Nigel P. French (196991)
Luca Busani (312962)
Wilfrid van Pelt (185301)

February 2013

The category ‘others’ includes clonal complexes and sequence types with less than five isolates.<...

The number of sequences after filtering of raw reads, the number of identified taxa, the percentage of reads successfully assigned to the phylum, family and genus levels (based on relative abundances) as well as the estimated richness and diversity indices for the bacterial communities (at 2% dissimilarity threshold).

Callum Richards (4488028)
Saria Otani (2853125)
Aram Mikaelyan (3242178)
Michael Poulsen (79510)

October 2017

The number of sequences after filtering of raw reads, the number of identified taxa, the percenta...

Distribution of Campylobacter species according to extent and severity of disease.

Indrani Mukhopadhya (229325)
John M. Thomson (229314)
Richard Hansen (229316)
Susan H. Berry (229319)
Emad M. El-Omar (233417)
Georgina L. Hold (229333)

February 2013

Distribution of Campylobacter species according to extent and severity of disease.</p

The species list with the number of positive sites, shared sites for multiple capture methods and eDNA metabarcoding with total reads of high-throughput parallel DNA sequencing (HTS), and the number of captured individuals.

Kazuya Fujii (6281558)
Hideyuki Doi (168146)
Shunsuke Matsuoka (3193908)
Mariko Nagano (618191)
Hirotoshi Sato (117839)
Hiroki Yamanaka (47976)

January 2019

The species list with the number of positive sites, shared sites for multiple capture methods and eD...

Number of samples positive for each of the five species of Campylobacter.

Håkan Johansson (5949734)
Patrik Ellström (199547)
Karin Artursson (3094857)
Charlotte Berg (4816041)
Jonas Bonnedahl (372145)
Ingrid Hansson (92891)
Jorge Hernandez (372146)
Juana Lopez-Martín (5949737)
Gonzalo Medina-Vogel (496370)
Lucila Moreno (5739146)
Björn Olsen (74813)
Eva Olsson Engvall (92894)
Hanna Skarin (634518)
Karin Troell (2576320)
Jonas Waldenström (24446)
Joakim Ågren (157525)
Daniel González-Acuña (400360)

November 2018

Numbers indicate samples for which species were determined by atpA sequencing; numbers in parenthese...

Campylobacter phasome analysis, generated by PhasomeIt

Jack Aidley (5723336)
Joseph J. Wanford (5220749)
Luke R. Green (5220752)
Samuel K. Sheppard (124129)
Christopher D. Bayliss (6702)

September 2018

Output of PhasomeIt from analysis of 77 Campylobacter genomes. Archive must be unzipped to view, as ...

Relative sequence abundance among different phyla.

Shih-Wei Lee (382046)
Chin-Sheng Kuan (3151401)
Lawrence Shih-Hsin Wu (3151398)
Julia Tzu-Ya Weng (3151395)

July 2016

A) Relative sequence abundance of bacterial phyla as identified by 16S rRNA gene sequencing. B) R...

Classification counts shown as a percentage of sequences detected per group between NM-1, AA-I, and AA+-I denoting the time course change in indoor-reared ticks at the Family taxonomic level.

Arturo C. Menchaca (426082)
David K. Visi (426083)
Otto F. Strey (426084)
Pete D. Teel (426085)
Kevin Kalinowski (426086)
Michael S. Allen (351863)
Phillip C. Williamson (191077)

June 2013

Classification counts shown as a percentage of sequences detected per group between NM-1, AA-I, a...

Number of species identified using DNA barcoding, photo identification and combined methods.

Angélica H. Klippel (780138)
Pablo V. Oliveira (780139)
Karollini B. Britto (780140)
Bárbara F. Freire (780141)
Marcel R. Moreno (780142)
Alexandre R. dos Santos (780143)
Aureo Banhos (780144)
Greiciane G. Paneto (780145)

August 2015

Number of species identified using DNA barcoding, photo identification and combined methods.</p

Percentages of relative abundance of reads for genera within order Rickettsiales for each tick species (also by sex and stage when available) according to BLAST analysis.

Aránzazu Portillo (4578847)
Ana M. Palomar (6482669)
María de Toro (676611)
Sonia Santibáñez (6482672)
Paula Santibáñez (3536945)
José A. Oteo (5651539)

March 2019

Percentages of relative abundance of reads for genera within order Rickettsiales for each tick speci...

Number of phyla, classes, orders, families and genera of bacteria identified per golden mantella frog population.

Luiza F. Passos (5916716)
Gerardo Garcia (377743)
Robert J. Young (1299507)

October 2018

Number of phyla, classes, orders, families and genera of bacteria identified per golden mantella fro...

The number of bacteria positive for carbapenemase genes and number of genes per organism.

Deogratius Okoche (784353)
Benon B. Asiimwe (301403)
Fred Ashaba Katabazi (133433)
Laban Kato (784354)
Christine F. Najjuka (424121)

August 2015

The number of bacteria positive for carbapenemase genes and number of genes per organism.</p

Publicly-available genomes used to produce a Campylobacter reference pan-genome.

Guillaume Méric (543892)
Koji Yahara (210105)
Leonardos Mageiros (543893)
Ben Pascoe (522026)
Martin C. J. Maiden (42431)
Keith A. Jolley (42429)
Samuel K. Sheppard (124129)

March 2014

Publicly-available genomes used to produce a Campylobacter reference pan-genome.</p

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two biological replicates for the protocol presented here (V2).

Rose Ruiz Daniels (13318728)
Richard S. Taylor (7327604)
Ross Dobie (11354106)
Sarah Salisbury (16949310)
James J. Furniss (5993546)
Emily Clark (586426)
Daniel J. Macqueen (6947858)
Diego Robledo (3413408)

September 2023

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two b...

Sequencing results of the 12 specimens separately performed by two methods.

Linxiang Chen (523347)
Ying Cai (22305)
Guangbiao Zhou (523348)
Xiaojun Shi (523349)
Jianhui Su (523350)
Guanwu Chen (523351)
Kun Lin (278765)

February 2014

Sequencing results of the 12 specimens separately performed by two methods.</p

Human Campylobacter strains per clonal complex and sequence type assigned with MLST.

Lapo Mughini Gras (284811)
Joost H. Smid (284810)
Jaap A. Wagenaar (103922)
Albert G. de Boer (284812)
Arie H. Havelaar (170779)
Ingrid H. M. Friesema (312961)
Nigel P. French (196991)
Luca Busani (312962)
Wilfrid van Pelt (185301)

February 2013

The category ‘others’ includes clonal complexes and sequence types with less than five isolates.<...

The number of sequences after filtering of raw reads, the number of identified taxa, the percentage of reads successfully assigned to the phylum, family and genus levels (based on relative abundances) as well as the estimated richness and diversity indices for the bacterial communities (at 2% dissimilarity threshold).

Callum Richards (4488028)
Saria Otani (2853125)
Aram Mikaelyan (3242178)
Michael Poulsen (79510)

October 2017

The number of sequences after filtering of raw reads, the number of identified taxa, the percenta...

Distribution of Campylobacter species according to extent and severity of disease.

Indrani Mukhopadhya (229325)
John M. Thomson (229314)
Richard Hansen (229316)
Susan H. Berry (229319)
Emad M. El-Omar (233417)
Georgina L. Hold (229333)

February 2013

Distribution of Campylobacter species according to extent and severity of disease.</p

The species list with the number of positive sites, shared sites for multiple capture methods and eDNA metabarcoding with total reads of high-throughput parallel DNA sequencing (HTS), and the number of captured individuals.

Kazuya Fujii (6281558)
Hideyuki Doi (168146)
Shunsuke Matsuoka (3193908)
Mariko Nagano (618191)
Hirotoshi Sato (117839)
Hiroki Yamanaka (47976)

January 2019

The species list with the number of positive sites, shared sites for multiple capture methods and eD...

Number of samples positive for each of the five species of Campylobacter.

Håkan Johansson (5949734)
Patrik Ellström (199547)
Karin Artursson (3094857)
Charlotte Berg (4816041)
Jonas Bonnedahl (372145)
Ingrid Hansson (92891)
Jorge Hernandez (372146)
Juana Lopez-Martín (5949737)
Gonzalo Medina-Vogel (496370)
Lucila Moreno (5739146)
Björn Olsen (74813)
Eva Olsson Engvall (92894)
Hanna Skarin (634518)
Karin Troell (2576320)
Jonas Waldenström (24446)
Joakim Ågren (157525)
Daniel González-Acuña (400360)

November 2018

Numbers indicate samples for which species were determined by atpA sequencing; numbers in parenthese...

Campylobacter phasome analysis, generated by PhasomeIt

Jack Aidley (5723336)
Joseph J. Wanford (5220749)
Luke R. Green (5220752)
Samuel K. Sheppard (124129)
Christopher D. Bayliss (6702)

September 2018

Output of PhasomeIt from analysis of 77 Campylobacter genomes. Archive must be unzipped to view, as ...

Relative sequence abundance among different phyla.

Shih-Wei Lee (382046)
Chin-Sheng Kuan (3151401)
Lawrence Shih-Hsin Wu (3151398)
Julia Tzu-Ya Weng (3151395)

July 2016

A) Relative sequence abundance of bacterial phyla as identified by 16S rRNA gene sequencing. B) R...

Classification counts shown as a percentage of sequences detected per group between NM-1, AA-I, and AA+-I denoting the time course change in indoor-reared ticks at the Family taxonomic level.

Arturo C. Menchaca (426082)
David K. Visi (426083)
Otto F. Strey (426084)
Pete D. Teel (426085)
Kevin Kalinowski (426086)
Michael S. Allen (351863)
Phillip C. Williamson (191077)

June 2013

Classification counts shown as a percentage of sequences detected per group between NM-1, AA-I, a...

Number of species identified using DNA barcoding, photo identification and combined methods.

Angélica H. Klippel (780138)
Pablo V. Oliveira (780139)
Karollini B. Britto (780140)
Bárbara F. Freire (780141)
Marcel R. Moreno (780142)
Alexandre R. dos Santos (780143)
Aureo Banhos (780144)
Greiciane G. Paneto (780145)

August 2015

Number of species identified using DNA barcoding, photo identification and combined methods.</p

Percentages of relative abundance of reads for genera within order Rickettsiales for each tick species (also by sex and stage when available) according to BLAST analysis.

Aránzazu Portillo (4578847)
Ana M. Palomar (6482669)
María de Toro (676611)
Sonia Santibáñez (6482672)
Paula Santibáñez (3536945)
José A. Oteo (5651539)

March 2019

Percentages of relative abundance of reads for genera within order Rickettsiales for each tick speci...

Number of phyla, classes, orders, families and genera of bacteria identified per golden mantella frog population.

Luiza F. Passos (5916716)
Gerardo Garcia (377743)
Robert J. Young (1299507)

October 2018

Number of phyla, classes, orders, families and genera of bacteria identified per golden mantella fro...

The number of bacteria positive for carbapenemase genes and number of genes per organism.

Deogratius Okoche (784353)
Benon B. Asiimwe (301403)
Fred Ashaba Katabazi (133433)
Laban Kato (784354)
Christine F. Najjuka (424121)

August 2015

The number of bacteria positive for carbapenemase genes and number of genes per organism.</p

Publicly-available genomes used to produce a Campylobacter reference pan-genome.

Guillaume Méric (543892)
Koji Yahara (210105)
Leonardos Mageiros (543893)
Ben Pascoe (522026)
Martin C. J. Maiden (42431)
Keith A. Jolley (42429)
Samuel K. Sheppard (124129)

March 2014

Publicly-available genomes used to produce a Campylobacter reference pan-genome.</p

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two biological replicates for the protocol presented here (V2).

Rose Ruiz Daniels (13318728)
Richard S. Taylor (7327604)
Ross Dobie (11354106)
Sarah Salisbury (16949310)
James J. Furniss (5993546)
Emily Clark (586426)
Daniel J. Macqueen (6947858)
Diego Robledo (3413408)

September 2023

Sequencing metrics for two biological replicate libraries created with the protocol V1 [7] and two b...

Sequencing results of the 12 specimens separately performed by two methods.

Linxiang Chen (523347)
Ying Cai (22305)
Guangbiao Zhou (523348)
Xiaojun Shi (523349)
Jianhui Su (523350)
Guanwu Chen (523351)
Kun Lin (278765)

February 2014

Sequencing results of the 12 specimens separately performed by two methods.</p

Human Campylobacter strains per clonal complex and sequence type assigned with MLST.

Lapo Mughini Gras (284811)
Joost H. Smid (284810)
Jaap A. Wagenaar (103922)
Albert G. de Boer (284812)
Arie H. Havelaar (170779)
Ingrid H. M. Friesema (312961)
Nigel P. French (196991)
Luca Busani (312962)
Wilfrid van Pelt (185301)

February 2013

The category ‘others’ includes clonal complexes and sequence types with less than five isolates.<...

Campylobacter Sequencing Results at Species-Level by Number of Species per Subject.

Abstract

Extracted data

Campylobacter Sequencing Results at Species-Level by Number of Species per Subject.

Abstract

Extracted data

Related items

Related items