<p>Plot is a trace of the effective population size over time of the YFV alignment, using a Bayesian skyline model. Mean population size (black line) is displayed with upper and lower bounds of the 95% HPD interval (blue and purple lines). Constant value of the trace between years 1940 and 2010 is indicative of stability in the estimated viral population during that time.</p
<p>The X-axis is in units of million years in the past and the Y-axis is <i>N</i><sub>e</sub>*µ (eff...
<p>Median estimates of effective population size (<i>N<sub>e</sub></i>), relative to generation time...
<p>A—All populations; B—Peripheral populations; C—Clade IV (see text for details). The x-axis is giv...
<p>A, Bayesian skyline plot of effective population size for CRF01_AE; B, Bayesian skyline plot of e...
<p>black line, median estimation; area between gray lines, 95% confidence interval.</p
<p>The y-axis represents the population size (Net) whereas x-axis indicates the time period in years...
<p>A) subtype 2c, B) subtype 2k; X-axis: Date in Years; Y-axis: Estimated effective number of infect...
<p>The plot indicates the median estimate of the effective population size, with the 95% highest pos...
<p>The x axis is time of mutations per site before present, and the y axis is the expressed populati...
<p>Bayesian skyline plot of historical female effective population size, light lines represent the 9...
<p>Changes in effective population size (millions of individuals on a log scale; Y-axes) are depicte...
<p>The plot depicts changes in the effective population size (<i>N</i><sub><i>e</i></sub>). The dark...
<p>Ordinate: the number of effective infections at time; abscissa: time (in years). The thick solid ...
<p>The Bayesian skyline plot was estimated under the HKY+I+G4 model. The MCMC chains were run for 10...
<p>The black line represents the median estimate of the effective number of infections through time ...
<p>The X-axis is in units of million years in the past and the Y-axis is <i>N</i><sub>e</sub>*µ (eff...
<p>Median estimates of effective population size (<i>N<sub>e</sub></i>), relative to generation time...
<p>A—All populations; B—Peripheral populations; C—Clade IV (see text for details). The x-axis is giv...
<p>A, Bayesian skyline plot of effective population size for CRF01_AE; B, Bayesian skyline plot of e...
<p>black line, median estimation; area between gray lines, 95% confidence interval.</p
<p>The y-axis represents the population size (Net) whereas x-axis indicates the time period in years...
<p>A) subtype 2c, B) subtype 2k; X-axis: Date in Years; Y-axis: Estimated effective number of infect...
<p>The plot indicates the median estimate of the effective population size, with the 95% highest pos...
<p>The x axis is time of mutations per site before present, and the y axis is the expressed populati...
<p>Bayesian skyline plot of historical female effective population size, light lines represent the 9...
<p>Changes in effective population size (millions of individuals on a log scale; Y-axes) are depicte...
<p>The plot depicts changes in the effective population size (<i>N</i><sub><i>e</i></sub>). The dark...
<p>Ordinate: the number of effective infections at time; abscissa: time (in years). The thick solid ...
<p>The Bayesian skyline plot was estimated under the HKY+I+G4 model. The MCMC chains were run for 10...
<p>The black line represents the median estimate of the effective number of infections through time ...
<p>The X-axis is in units of million years in the past and the Y-axis is <i>N</i><sub>e</sub>*µ (eff...
<p>Median estimates of effective population size (<i>N<sub>e</sub></i>), relative to generation time...
<p>A—All populations; B—Peripheral populations; C—Clade IV (see text for details). The x-axis is giv...