<p>For comparing gene expression level between the two libraries, each library was normalized to 1 million tags. Red dots represent transcripts more prevalent in the phenol treatment library, green dots show those present at a lower frequency in the infected tissue and blue dots indicate transcripts that did not change significantly. The parameters “FDR<0.001” and “log2 Ratio≥1” were used as the threshold to judge the significance of gene expression difference.</p
<p>(A) Gene expression analysis among <u>promastigotes</u>: PRO constant...
<p>Relative gene expression levels shown with high expression are represented by red color and the l...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>For comparing gene expression levels between the two libraries, each library was normalised to 1 ...
<p>To compare the level of gene expression between two libraries, each library was normalized to TPM...
<p>The X and Y-axes show the mRNA expression levels in the two samples. The up-regulated and down-re...
<p>Blue dots represent the transcripts with no significant differential expression. Red and green do...
<p>Yellow triangles represent up-regulated genes, blue rhombuses indicate down-regulated genes, and ...
<p>S56: pBMECs infected with S56 strain; S36: pBMECs infected with S36 strain; S178: pBMECs infected...
<p>Gene expression level was determined by calculating the number of unambiguous tags for each gene ...
<p>The blue dots that differed by less than two fold between the two libraries, defined “no differen...
<p>Each circle represents a single contig, with blue circles indicating those contigs that are diffe...
<p>Fold changes are expressed as the ratio of gene expression between XGC and YRC after normalizatio...
<p>DEGs were filtered using FDR ≤0.001 and |log<sub>2</sub>ratio| ≧1 as a threshold. Red spots repre...
<p>A) The number of differently expressed genes. High expression is represented by red and low expre...
<p>(A) Gene expression analysis among <u>promastigotes</u>: PRO constant...
<p>Relative gene expression levels shown with high expression are represented by red color and the l...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>For comparing gene expression levels between the two libraries, each library was normalised to 1 ...
<p>To compare the level of gene expression between two libraries, each library was normalized to TPM...
<p>The X and Y-axes show the mRNA expression levels in the two samples. The up-regulated and down-re...
<p>Blue dots represent the transcripts with no significant differential expression. Red and green do...
<p>Yellow triangles represent up-regulated genes, blue rhombuses indicate down-regulated genes, and ...
<p>S56: pBMECs infected with S56 strain; S36: pBMECs infected with S36 strain; S178: pBMECs infected...
<p>Gene expression level was determined by calculating the number of unambiguous tags for each gene ...
<p>The blue dots that differed by less than two fold between the two libraries, defined “no differen...
<p>Each circle represents a single contig, with blue circles indicating those contigs that are diffe...
<p>Fold changes are expressed as the ratio of gene expression between XGC and YRC after normalizatio...
<p>DEGs were filtered using FDR ≤0.001 and |log<sub>2</sub>ratio| ≧1 as a threshold. Red spots repre...
<p>A) The number of differently expressed genes. High expression is represented by red and low expre...
<p>(A) Gene expression analysis among <u>promastigotes</u>: PRO constant...
<p>Relative gene expression levels shown with high expression are represented by red color and the l...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...