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Minor allele frequency for all variants successfully genotyped using the Illumina Human Exome array.

Christopher A. Haiman (89922)
Ying Han (137520)
Ye Feng (196094)
Lucy Xia (395763)
Chris Hsu (395764)
Xin Sheng (219717)
Loreall C. Pooler (219720)
Yesha Patel (395765)
Laurence N. Kolonel (89924)
Erin Carter (395766)
Karen Park (395767)
Loic Le Marchand (89925)
David Van Den Berg (91777)
Brian E. Henderson (89923)
Daniel O. Stram (89926)

Publication date

March 2013

DOI

10.1371/journal.pgen.1003419.g001

Abstract

<p>Minor allele frequency for all variants successfully genotyped using the Illumina Human Exome array.</p

Extracted data

Related items

Minor allele frequency in the African American HCM cohort, African American controls and individuals with African ancestry from the ExAc Database.

Xiaoping Lin (215407)
Steven Steinberg (582816)
Suresh K. Kandasamy (2794198)
Junaid Afzal (2794192)
Blaid Mbiyangandu (2794195)
Susan E. Liao (2794177)
Yufan Guan (2794171)
Celia P. Corona-Villalobos (2794189)
Scot J. Matkovich (421129)
Neal Epstein (2794180)
Dotti Tripodi (2794204)
Zhaoxia Huo (2794183)
Garry Cutting (2794201)
Theodore P. Abraham (2794174)
Ryuya Fukunaga (2794186)
M. Roselle Abraham (242563)

May 2016

<p>Minor allele frequency in the African American HCM cohort, African American controls and individu...

Discordance (%) between imputed genotypes and actually observed minor allele genotypes<sup>1</sup> at rare and low-frequency SNPs on the exome chip but not in the Omni2.5.

Erwin Tantoso (21708)
Lai-Ping Wong (564640)
Bowen Li (200859)
Woei-Yuh Saw (564642)
Wenting Xu (564646)
Peter Little (564650)
Rick Twee-Hee Ong (194252)
Yik-Ying Teo (159446)

September 2014

1<p>A minor allele genotype is defined as a genotype that carries at least one copy of the minor all...

Minor allele frequency (MAF) of associated variants.

Diana Chang (153030)
Alon Keinan (153034)

July 2012

<p>Box plot of the minor allele frequency for all associated variants in the different scenarios. Al...

Minor allele frequency for all variants successfully genotyped over all ethnicities.

May 2014

<p>The number of variants is plotted by the minor allele frequency over all ethnicities. These varia...

The distribution of minor allele frequency of valid variants calls by genotyping by sequencing.

Tiejun Zhang (224265)
Long-Xi Yu (511921)
Ping Zheng (21877)
Yajun Li (240938)
Martha Rivera (800390)
Dorrie Main (4682)
Stephanie L. Greene (615843)

September 2015

<p>The distribution of minor allele frequency of valid variants calls by genotyping by sequencing.</...

Frequencies for minor allele in each study group and International HapMap Project population data.

Gloria Pérez-Rubio (2611231)
Alejandra Ramírez-Venegas (837317)
Valeri Noé Díaz (3684685)
Leonor García Gómez (3684676)
Karina Elvira Fabián (3684667)
Salvador García Carmona (3684688)
Luis A. López-Flores (3684670)
Enrique Ambrocio-Ortiz (3684673)
Rocío Contreras Romero (3684679)
Noé Alcantar-Ayala (3684682)
Raúl H. Sansores (2611261)
Ramcés Falfán-Valencia (837320)

January 2017

<p>Frequencies for minor allele in each study group and International HapMap Project population data...

Overview of the minor allele frequency (in %) of heteroplasmic variants detected in this study.

Kim Vancampenhout (657225)
Ben Caljon (657226)
Claudia Spits (657227)
Katrien Stouffs (657228)
An Jonckheere (657229)
Linda De Meirleir (657230)
Willy Lissens (657231)
Arnaud Vanlander (657232)
Joél Smet (4775175)
Boel De Paepe (657233)
Rudy Van Coster (56848)
Sara Seneca (657234)

November 2014

<p>Overview of the minor allele frequency (in %) of heteroplasmic variants detected in this study.</...

Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.

Jan G. A. M. L. Uitdewilligen (411315)
Anne-Marie A. Wolters (411316)
Bjorn B. D’hoop (411317)
Theo J. A. Borm (411318)
Richard G. F. Visser (52153)
Herman J. van Eck (411319)

May 2013

<p>Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.</p

Minor Allele frequency distribution for the ten most differentiated PGx variants among 1kG ancestral groups.

Kleanthi Lakiotaki (3121566)
Alexandros Kanterakis (3121563)
Evgenia Kartsaki (3121572)
Theodora Katsila (1772089)
George P. Patrinos (111444)
George Potamias (3121569)

August 2017

<p>Minor Allele frequency distribution for the ten most differentiated PGx variants among 1kG ancest...

Minor allele frequency distributions in different classes of functional sites in the YRI population.

David W. Gould (143616)
Sergio Lukic (143619)
Kevin C. Chen (143621)

October 2012

<p>Minor allele frequency distributions in different classes of functional sites in the YRI populati...

Minor allele frequency distributions in different classes of functional sites in the CEU population.

David W. Gould (143616)
Sergio Lukic (143619)
Kevin C. Chen (143621)

October 2012

<p>Minor allele frequency distributions in different classes of functional sites in the CEU populati...

The typical distribution of minor allele frequency of the simulated genotypic data.

Zhe Zhang (81603)
Jianfeng Liu (122580)
Xiangdong Ding (122577)
Piter Bijma (153734)
Dirk-Jan de Koning (57294)
Qin Zhang (58638)

February 2013

<p>The typical distribution of minor allele frequency of the simulated genotypic data.</p

Minor Allele Frequency heatmap for 79 PGx variants that are common (MAF> = 0.1) and rare (MAF< = 0.005) in at least one 1kG population.

Kleanthi Lakiotaki (3121566)
Alexandros Kanterakis (3121563)
Evgenia Kartsaki (3121572)
Theodora Katsila (1772089)
George P. Patrinos (111444)
George Potamias (3121569)

August 2017

<p>Minor Allele Frequency heatmap for 79 PGx variants that are common (MAF> = 0.1) and rare (MAF< = ...

The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.

Hou-Feng Zheng (152901)
Jing-Jing Rong (686403)
Ming Liu (105953)
Fang Han (435237)
Xing-Wei Zhang (686404)
J. Brent Richards (144368)
Li Wang (15202)

January 2015

<p>The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.</p

Exome chip minor allele frequency distribution by race.

Megan L. Grove (433250)
Bing Yu (237109)
Barbara J. Cochran (433251)
Talin Haritunians (262584)
Joshua C. Bis (183182)
Kent D. Taylor (123459)
Mark Hansen (28991)
Ingrid B. Borecki (113678)
L. Adrienne Cupples (113601)
Myriam Fornage (45591)
Vilmundur Gudnason (8873)
Tamara B. Harris (110195)
Sekar Kathiresan (60585)
Robert Kraaij (418732)
Lenore J. Launer (110269)
Daniel Levy (51573)
Yongmei Liu (104713)
Thomas Mosley (115371)
Gina M. Peloso (433252)
Bruce M. Psaty (103721)
Stephen S. Rich (110262)
Fernando Rivadeneira (61551)
David S. Siscovick (174822)
Albert V. Smith (103644)
Andre Uitterlinden (3508127)
Cornelia M. van Duijn (103685)
James G. Wilson (113688)
Christopher J. O’Donnell (110479)
Jerome I. Rotter (103729)
Eric Boerwinkle (36288)

July 2013

<p>The following samples were excluded: all AGES individuals, race unknown or not reported, known re...

Minor allele frequency in the African American HCM cohort, African American controls and individuals with African ancestry from the ExAc Database.

Xiaoping Lin (215407)
Steven Steinberg (582816)
Suresh K. Kandasamy (2794198)
Junaid Afzal (2794192)
Blaid Mbiyangandu (2794195)
Susan E. Liao (2794177)
Yufan Guan (2794171)
Celia P. Corona-Villalobos (2794189)
Scot J. Matkovich (421129)
Neal Epstein (2794180)
Dotti Tripodi (2794204)
Zhaoxia Huo (2794183)
Garry Cutting (2794201)
Theodore P. Abraham (2794174)
Ryuya Fukunaga (2794186)
M. Roselle Abraham (242563)

May 2016

<p>Minor allele frequency in the African American HCM cohort, African American controls and individu...

Discordance (%) between imputed genotypes and actually observed minor allele genotypes<sup>1</sup> at rare and low-frequency SNPs on the exome chip but not in the Omni2.5.

Erwin Tantoso (21708)
Lai-Ping Wong (564640)
Bowen Li (200859)
Woei-Yuh Saw (564642)
Wenting Xu (564646)
Peter Little (564650)
Rick Twee-Hee Ong (194252)
Yik-Ying Teo (159446)

September 2014

1<p>A minor allele genotype is defined as a genotype that carries at least one copy of the minor all...

Minor allele frequency (MAF) of associated variants.

Diana Chang (153030)
Alon Keinan (153034)

July 2012

<p>Box plot of the minor allele frequency for all associated variants in the different scenarios. Al...

Minor allele frequency for all variants successfully genotyped over all ethnicities.

May 2014

<p>The number of variants is plotted by the minor allele frequency over all ethnicities. These varia...

The distribution of minor allele frequency of valid variants calls by genotyping by sequencing.

Tiejun Zhang (224265)
Long-Xi Yu (511921)
Ping Zheng (21877)
Yajun Li (240938)
Martha Rivera (800390)
Dorrie Main (4682)
Stephanie L. Greene (615843)

September 2015

<p>The distribution of minor allele frequency of valid variants calls by genotyping by sequencing.</...

Frequencies for minor allele in each study group and International HapMap Project population data.

Gloria Pérez-Rubio (2611231)
Alejandra Ramírez-Venegas (837317)
Valeri Noé Díaz (3684685)
Leonor García Gómez (3684676)
Karina Elvira Fabián (3684667)
Salvador García Carmona (3684688)
Luis A. López-Flores (3684670)
Enrique Ambrocio-Ortiz (3684673)
Rocío Contreras Romero (3684679)
Noé Alcantar-Ayala (3684682)
Raúl H. Sansores (2611261)
Ramcés Falfán-Valencia (837320)

January 2017

<p>Frequencies for minor allele in each study group and International HapMap Project population data...

Overview of the minor allele frequency (in %) of heteroplasmic variants detected in this study.

Kim Vancampenhout (657225)
Ben Caljon (657226)
Claudia Spits (657227)
Katrien Stouffs (657228)
An Jonckheere (657229)
Linda De Meirleir (657230)
Willy Lissens (657231)
Arnaud Vanlander (657232)
Joél Smet (4775175)
Boel De Paepe (657233)
Rudy Van Coster (56848)
Sara Seneca (657234)

November 2014

<p>Overview of the minor allele frequency (in %) of heteroplasmic variants detected in this study.</...

Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.

Jan G. A. M. L. Uitdewilligen (411315)
Anne-Marie A. Wolters (411316)
Bjorn B. D’hoop (411317)
Theo J. A. Borm (411318)
Richard G. F. Visser (52153)
Herman J. van Eck (411319)

May 2013

<p>Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.</p

Minor Allele frequency distribution for the ten most differentiated PGx variants among 1kG ancestral groups.

Kleanthi Lakiotaki (3121566)
Alexandros Kanterakis (3121563)
Evgenia Kartsaki (3121572)
Theodora Katsila (1772089)
George P. Patrinos (111444)
George Potamias (3121569)

August 2017

<p>Minor Allele frequency distribution for the ten most differentiated PGx variants among 1kG ancest...

Minor allele frequency distributions in different classes of functional sites in the YRI population.

David W. Gould (143616)
Sergio Lukic (143619)
Kevin C. Chen (143621)

October 2012

<p>Minor allele frequency distributions in different classes of functional sites in the YRI populati...

Minor allele frequency distributions in different classes of functional sites in the CEU population.

David W. Gould (143616)
Sergio Lukic (143619)
Kevin C. Chen (143621)

October 2012

<p>Minor allele frequency distributions in different classes of functional sites in the CEU populati...

The typical distribution of minor allele frequency of the simulated genotypic data.

Zhe Zhang (81603)
Jianfeng Liu (122580)
Xiangdong Ding (122577)
Piter Bijma (153734)
Dirk-Jan de Koning (57294)
Qin Zhang (58638)

February 2013

<p>The typical distribution of minor allele frequency of the simulated genotypic data.</p

Minor Allele Frequency heatmap for 79 PGx variants that are common (MAF> = 0.1) and rare (MAF< = 0.005) in at least one 1kG population.

Kleanthi Lakiotaki (3121566)
Alexandros Kanterakis (3121563)
Evgenia Kartsaki (3121572)
Theodora Katsila (1772089)
George P. Patrinos (111444)
George Potamias (3121569)

August 2017

<p>Minor Allele Frequency heatmap for 79 PGx variants that are common (MAF> = 0.1) and rare (MAF< = ...

The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.

Hou-Feng Zheng (152901)
Jing-Jing Rong (686403)
Ming Liu (105953)
Fang Han (435237)
Xing-Wei Zhang (686404)
J. Brent Richards (144368)
Li Wang (15202)

January 2015

<p>The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.</p

Exome chip minor allele frequency distribution by race.

Megan L. Grove (433250)
Bing Yu (237109)
Barbara J. Cochran (433251)
Talin Haritunians (262584)
Joshua C. Bis (183182)
Kent D. Taylor (123459)
Mark Hansen (28991)
Ingrid B. Borecki (113678)
L. Adrienne Cupples (113601)
Myriam Fornage (45591)
Vilmundur Gudnason (8873)
Tamara B. Harris (110195)
Sekar Kathiresan (60585)
Robert Kraaij (418732)
Lenore J. Launer (110269)
Daniel Levy (51573)
Yongmei Liu (104713)
Thomas Mosley (115371)
Gina M. Peloso (433252)
Bruce M. Psaty (103721)
Stephen S. Rich (110262)
Fernando Rivadeneira (61551)
David S. Siscovick (174822)
Albert V. Smith (103644)
Andre Uitterlinden (3508127)
Cornelia M. van Duijn (103685)
James G. Wilson (113688)
Christopher J. O’Donnell (110479)
Jerome I. Rotter (103729)
Eric Boerwinkle (36288)

July 2013

<p>The following samples were excluded: all AGES individuals, race unknown or not reported, known re...

Minor allele frequency in the African American HCM cohort, African American controls and individuals with African ancestry from the ExAc Database.

Xiaoping Lin (215407)
Steven Steinberg (582816)
Suresh K. Kandasamy (2794198)
Junaid Afzal (2794192)
Blaid Mbiyangandu (2794195)
Susan E. Liao (2794177)
Yufan Guan (2794171)
Celia P. Corona-Villalobos (2794189)
Scot J. Matkovich (421129)
Neal Epstein (2794180)
Dotti Tripodi (2794204)
Zhaoxia Huo (2794183)
Garry Cutting (2794201)
Theodore P. Abraham (2794174)
Ryuya Fukunaga (2794186)
M. Roselle Abraham (242563)

May 2016

<p>Minor allele frequency in the African American HCM cohort, African American controls and individu...

Discordance (%) between imputed genotypes and actually observed minor allele genotypes<sup>1</sup> at rare and low-frequency SNPs on the exome chip but not in the Omni2.5.

Erwin Tantoso (21708)
Lai-Ping Wong (564640)
Bowen Li (200859)
Woei-Yuh Saw (564642)
Wenting Xu (564646)
Peter Little (564650)
Rick Twee-Hee Ong (194252)
Yik-Ying Teo (159446)

September 2014

1<p>A minor allele genotype is defined as a genotype that carries at least one copy of the minor all...

Minor allele frequency (MAF) of associated variants.

Diana Chang (153030)
Alon Keinan (153034)

July 2012

<p>Box plot of the minor allele frequency for all associated variants in the different scenarios. Al...