<p>Shown are results of an analysis that is identical to that of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0060876#pone-0060876-g003" target="_blank">Figure 3</a>, but simulated fields are used here. Unlike simulations shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0060876#pone-0060876-g002" target="_blank">Figure 2</a>, the simulations performed here were based on the molds derived from the experimental fields, with both the locations of the nuclei and the proportions of the nuclear types constrained by experimental observations. Note that the profiles of individual nuclear types are all below 0. This is expected because the nuclei of a given type are spatially mixed with the nucl...
<p>Filled circles, open circles, open squares, and the stippled line were reproduced from <a href="h...
<p>The figure shows four examples of different kinds of conformational sampling observed in the simu...
<p>Performing an F-function Test over 200 synthetic nuclei instances similar to that shown in <a hre...
<p>Shown are the profiles of H-functions with respect of the distance <i>r</i> for Type-0 nuclei (A)...
<p>Shown are regularity indexes (RI) derived by the measurement of nearest-neighbor distances. Black...
<p>In panel <b>A</b>, the stippled line is <i>R</i><sub><i>h</i></sub> from <a href="http://www.plos...
<p>A: Equilibrium positions for the 36 model classes (examples). Combinations of forces (att: attrac...
<p>(<b>A</b>) HS effect is modeled via a time-dependent attenuation function y(t). Each model simula...
<p>(A) shows the distribution of distance between consecutive foci along the track for a set of 197 ...
<p><b>A</b>: Results of a typical run at the exponential growth phase and at equilibrium (type A cel...
<p>A) Simulations of nuclear Dl levels at the last nuclear cycle of each genotype for the entire cro...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>See legend of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0073567#pone-...
<p>Overview of the different HRF functions used in the simulation studies (left) and illustration of...
<p>Each circle and square represents a simulated disordered polypeptide. Squares are from ensembles ...
<p>Filled circles, open circles, open squares, and the stippled line were reproduced from <a href="h...
<p>The figure shows four examples of different kinds of conformational sampling observed in the simu...
<p>Performing an F-function Test over 200 synthetic nuclei instances similar to that shown in <a hre...
<p>Shown are the profiles of H-functions with respect of the distance <i>r</i> for Type-0 nuclei (A)...
<p>Shown are regularity indexes (RI) derived by the measurement of nearest-neighbor distances. Black...
<p>In panel <b>A</b>, the stippled line is <i>R</i><sub><i>h</i></sub> from <a href="http://www.plos...
<p>A: Equilibrium positions for the 36 model classes (examples). Combinations of forces (att: attrac...
<p>(<b>A</b>) HS effect is modeled via a time-dependent attenuation function y(t). Each model simula...
<p>(A) shows the distribution of distance between consecutive foci along the track for a set of 197 ...
<p><b>A</b>: Results of a typical run at the exponential growth phase and at equilibrium (type A cel...
<p>A) Simulations of nuclear Dl levels at the last nuclear cycle of each genotype for the entire cro...
a<p> Peptide-PKA heavy atoms that form a HB (Notations of atoms refer to the name of atoms from the ...
<p>See legend of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0073567#pone-...
<p>Overview of the different HRF functions used in the simulation studies (left) and illustration of...
<p>Each circle and square represents a simulated disordered polypeptide. Squares are from ensembles ...
<p>Filled circles, open circles, open squares, and the stippled line were reproduced from <a href="h...
<p>The figure shows four examples of different kinds of conformational sampling observed in the simu...
<p>Performing an F-function Test over 200 synthetic nuclei instances similar to that shown in <a hre...