<p>The genomes were aligned by BioEdit and edited using Base-by-Base software. A consensus sequence was generated from TT8 to TT12 by Base-By-Base software. Sites in TT clones different from the consensus sequence are displayed in blue for nucleotide substitutions, green for insertions, and red for deletions. The extent of similarity (%) of each clone with the consensus sequence is displayed.</p
SNPs were mapped relative to the Bd21 reference genome chromosome sequences with each datapoint show...
★<p>Total number of polymorphisms: SNPs, insertions and deletions as a whole.</p>♦<p>Average polymor...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...
<p>The number of polymorphic sites in each protein coding gene is divided by the gene length to obta...
and C/G, 8.92%. The two nucleotides immediately neighboring the variable site showed major deviation...
<p>Size of the portion of genome aligned on the reference genome at different coverage levels for th...
<p>Non-identical nucleotides for genotypes A, D, F1b and F4 are shown. Nucleotides shared between ge...
Nucleotide alignment of concatenated SNPs. The consensus sequence is shown above the alignment, with...
<p>Non-synonymous polymorphisms (red) are shown above the line and synonymous polymorphisms (blue) a...
(A) PT site mapping across the E. coli B7A genome. From outer to inner circles: 1 to 7 (PT sites mod...
<p>A) Average recombination rates (on a logarithmic scale) for DNA repeats as a function of average ...
<p>Intra-genomic D1/D2 variants cloned from individual strains are indicated as D1/D2 copies. The nu...
<p>Each grey bar represents one single nucleotide difference between the two clones detected in the ...
<p>Chromosome numbers are indicated on the left; large black circles represent centromere locations....
<p>The 454 generated sequences produced 16 individual alignments with the published genome. Eleven o...
SNPs were mapped relative to the Bd21 reference genome chromosome sequences with each datapoint show...
★<p>Total number of polymorphisms: SNPs, insertions and deletions as a whole.</p>♦<p>Average polymor...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...
<p>The number of polymorphic sites in each protein coding gene is divided by the gene length to obta...
and C/G, 8.92%. The two nucleotides immediately neighboring the variable site showed major deviation...
<p>Size of the portion of genome aligned on the reference genome at different coverage levels for th...
<p>Non-identical nucleotides for genotypes A, D, F1b and F4 are shown. Nucleotides shared between ge...
Nucleotide alignment of concatenated SNPs. The consensus sequence is shown above the alignment, with...
<p>Non-synonymous polymorphisms (red) are shown above the line and synonymous polymorphisms (blue) a...
(A) PT site mapping across the E. coli B7A genome. From outer to inner circles: 1 to 7 (PT sites mod...
<p>A) Average recombination rates (on a logarithmic scale) for DNA repeats as a function of average ...
<p>Intra-genomic D1/D2 variants cloned from individual strains are indicated as D1/D2 copies. The nu...
<p>Each grey bar represents one single nucleotide difference between the two clones detected in the ...
<p>Chromosome numbers are indicated on the left; large black circles represent centromere locations....
<p>The 454 generated sequences produced 16 individual alignments with the published genome. Eleven o...
SNPs were mapped relative to the Bd21 reference genome chromosome sequences with each datapoint show...
★<p>Total number of polymorphisms: SNPs, insertions and deletions as a whole.</p>♦<p>Average polymor...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...