Average proportion of pairs of reads mapped across a breakpoint that are correctly mapped as discordant.

<p>Correct discordant read pairs are expressed relative to all reads mapped across the same breakpoint, as a function of the length of the repeat (relative to the length of the template) and the identity between the copies (relative to the read length). Data from all 14 simulated paired-end sequencing experiments are used. Cells may have different standard errors, due to differences in the total number of reads used to calculate the proportion of discordant pairs in each situation.