lncRNAs with cell-type specific expression are also associated with cell-type specific TE–DHS.

<p>Cell-type specific lncRNA based on RNA-Seq expression (cutoff of 10-fold higher) were identified in GM = GM12878, H1 or K562. Numbers of cell-type specific lncRNAs are written above graphs. For each lncRNA, only the most active proximal TE-DHS (<10 Kb) was retained and the distribution of normalized tag counts over these elements are shown in each cell type (*** for <i>P</i><0.0001, ns for <i>P</i>>0.5.).