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Automated DNA sequencing of the ML1527056 locus from A.Sk19. B.Reference strain NHDP63 and C.Sk14.

G. Michael Taylor (408398)
Katie Tucker (408399)
Rachel Butler (263302)
Alistair W. G. Pike (408400)
Jamie Lewis (408401)
Simon Roffey (408402)
Philip Marter (408403)
Oona Y-C Lee (408404)
Houdini H. T. Wu (147464)
David E. Minnikin (147485)
Gurdyal S. Besra (37660)
Pushpendra Singh (185150)
Stewart T. Cole (142597)
Graham R. Stewart (7103)

Publication date

April 2013

DOI

10.1371/journal.pone.0062406.g006

Abstract

<p>Automated DNA sequencing of the ML1527056 locus from A.Sk19. B.Reference strain NHDP63 and C.Sk14.</p

Extracted data

Related items

Relationship between amount of genomic DNA isolated from H1975 and areas under the mutation peaks obtained by MBP-QP.

Naoko Sueoka-Aragane (402105)
Akemi Sato (402106)
Naomi Kobayashi (668288)
Masaru Ide (402107)
Masako Yokoo (668289)
Yumi Nagano (668290)
Eisaburo Sueoka (402104)
Seiji Okada (291179)
Shinya Kimura (247648)

December 2014

<p>The results of T790M (A, B) and L858R (C, D) are shown. The MBP-QP method for detection of T790M ...

Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—Serotype Asia1.

Lisbeth Ramirez-Carvajal (4813950)
Steven J. Pauszek (843771)
Zaheer Ahmed (2471398)
Umer Farooq (1607068)
Khalid Naeem (4813947)
Reed S. Shabman (278818)
Timothy B. Stockwell (249318)
Luis L. Rodriguez (358559)

February 2018

<p>Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—...

Illustration of locus definitions as defined by flanking sequence landmarks (FSLs).

Brian Young (200156)
Jonathan L. King (4034357)
Bruce Budowle (322785)
Luigi Armogida (4034360)

May 2017

<p>The genomic sub-sequence between GRCh38/hg38 positions chr2:68,011,892 and chr2:68,012,004 includ...

rs1800925 genotyping by direct sequencing: (a) CC genotype; (b) CT genotype; (c) TT genotype.

Yan Deng (159032)
Ming Xie (420493)
Li Xie (108913)
Jian Wang (5901)
Taijie Li (519116)
Yu He (420536)
Ruolin Li (519115)
Shan Li (110392)
Xue Qin (123365)

February 2015

<p>rs1800925 genotyping by direct sequencing: (a) CC genotype; (b) CT genotype; (c) TT genotype.</p

rs20541 genotyping by direct sequencing: (a) GG genotype; (b) GA genotype; (c) AA genotype.

Yan Deng (159032)
Ming Xie (420493)
Li Xie (108913)
Jian Wang (5901)
Taijie Li (519116)
Yu He (420536)
Ruolin Li (519115)
Shan Li (110392)
Xue Qin (123365)

February 2015

<p>rs20541 genotyping by direct sequencing: (a) GG genotype; (b) GA genotype; (c) AA genotype.</p

Automated DNA sequencing and analysis of 106 kilobases from human chromosome 19q13.3

Martin-Gallardo, A.
McCombie, W. R.
Gocayne, J. D.
FitzGerald, M. G.
Wallace, S.
Lee, B. M. B.
Lamerdin, J.
Trapp, S.
Kelley, J. M.
Liu, L. I.
Dubnick, M.
Johnston-Dow, L. A.
Kerlavage, A. R.
De Jong, P.
Carrano, A.
Fields, C.
Venter, J. C.

January 1992

A total of 116,118 basepairs (bp) derived from three cosmids spanning the ERCC1 locus of human chrom...

MLH3 Thr942Ile, Pro844Leu genotypes and MLH3 mRNA expression level detection.

Feng Ye (173489)
Qi Cheng (46307)
Jiajie Shen (555045)
Caiyun Zhou (555046)
Huaizeng Chen (322620)

April 2014

<p>(<b>A</b>) Genomic DNA electrophoresis. M: Wide Range DNA Marker (500–15000); 1,2: Control; 3,4: ...

Sequence divergence and putative recombination sites at the locus in serotype D strains

Guanggan Hu (46968)
Iris Liu (46969)
Anita Sham (40813)
Jason E Stajich (2213)
Fred S Dietrich (2025)
James W Kronstad (40817)

December 2011

The chromosomal coordinates are shown at the top and the annotated genes in the region are indicated...

The pedigrees and automated sequencing traces of the <i>WISP3</i> gene mutations in the two families in our study.

Jing Sun (141206)
Weibo Xia (306610)
Shuli He (320106)
Zhen Zhao (159931)
Min Nie (306607)
Mei Li (217363)
Yan Jiang (12139)
Xiaoping Xing (306612)
Ou Wang (306605)
Xunwu Meng (306611)
Xueying Zhou (320107)

February 2013

<p>The pedigrees and automated sequencing traces of the <i>WISP3</i> gene mutations in the two famil...

The 16s RNA sequencing confirmed the strain LK3 is a novel species with G+C content of the isolated DNA at 57.29 mol%.

L. Karthik (533341)
Gaurav Kumar (344052)
Tarun Keswani (533342)
Arindam Bhattacharyya (533343)
S. Sarath Chandar (533344)
K. V. Bhaskara Rao (533345)

March 2014

<p>The 16s RNA sequencing confirmed the strain LK3 is a novel species with G+C content of the isolat...

ML tree based on 16S rRNA gene nucleotide sequences of strain PT1<sup>T</sup> and related type strains.

Rika Kudo (16834202)
Ryota Yamano (3389096)
Juanwen Yu (11865881)
Shotaro Koike (16834205)
Alfabetian Harjuno Condro Haditomo (11865878)
Mayanne A. M. de Freitas (12567628)
Jiro Tsuchiya (14095446)
Sayaka Mino (789010)
Fabiano Thompson (3631351)
Jesús L. Romalde (5712650)
Hisae Kasai (8034749)
Yuichi Sakai (11865884)
Tomoo Sawabe (627132)

August 2023

ML tree based on 16S rRNA gene nucleotide sequences of strain PT1T and related type strains.</p

A study of DNA identification using nonradioactive automated minisatellite variant repeat (MVR) digital typing

Jang, Gi Young

January 1993

The Minisatellite Variant Repeat (MVR) typing technique developed by Dr. Alec Jeffreys (Nature 354:2...

DNA sequence analysis of individuals from family-123.

Nivedita Singh (499697)
Pradeep Kallollimath (6667934)
Mohd Hussain Shah (2794834)
Saketh Kapoor (2794855)
Vishwanath Kumble Bhat (6667937)
Lakshminarayanapuram Gopal Viswanathan (6667940)
Madhu Nagappa (2794837)
Parayil S. Bindu (6667943)
Arun B. Taly (2794858)
Sanjib Sinha (2794840)
Arun Kumar (49927)

May 2019

(Upper panel) Sequencing chromatogram from the affected individual II-2 from family-123. Arrow marks...

Detection of genetic rearrangements in the regulators of complement activation RCA cluster by high-throughput sequencing and MLPA

García-Fernández, Jesús
Vilches-Arroyo, Susana
Olavarrieta, Leticia
Pérez Pérez, J.
Rodríguez de Córdoba, Santiago

April 2021

20 p.-6 fig.-3 tab.The regulators of complement activation (RCA) gene cluster in 1q31-1q32 includes ...

Sequence Genbank accession number for each haplotype found with the markers P-28S, P-ITS2, P-C1 and P-ITS2.

Thibaut Malausa (251819)
Mathilde Delaunay (3160293)
Alexandre Fleisch (3160308)
Géraldine Groussier-Bout (2916650)
Sylvie Warot (3160317)
Didier Crochard (378225)
Emilio Guerrieri (750341)
Gérard Delvare (3160290)
Giuseppina Pellizzari (3160302)
M. Bora Kaydan (3160299)
Nadia Al-Khateeb (3160311)
Jean-François Germain (604426)
Lisa Brancaccio (3160305)
Isabelle Le Goff (3160314)
Melissa Bessac (3160296)
Nicolas Ris (571703)
Philippe Kreiter (3160287)

June 2016

<p>Sequence Genbank accession number for each haplotype found with the markers P-28S, P-ITS2, P-C1 a...

Relationship between amount of genomic DNA isolated from H1975 and areas under the mutation peaks obtained by MBP-QP.

Naoko Sueoka-Aragane (402105)
Akemi Sato (402106)
Naomi Kobayashi (668288)
Masaru Ide (402107)
Masako Yokoo (668289)
Yumi Nagano (668290)
Eisaburo Sueoka (402104)
Seiji Okada (291179)
Shinya Kimura (247648)

December 2014

<p>The results of T790M (A, B) and L858R (C, D) are shown. The MBP-QP method for detection of T790M ...

Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—Serotype Asia1.

Lisbeth Ramirez-Carvajal (4813950)
Steven J. Pauszek (843771)
Zaheer Ahmed (2471398)
Umer Farooq (1607068)
Khalid Naeem (4813947)
Reed S. Shabman (278818)
Timothy B. Stockwell (249318)
Luis L. Rodriguez (358559)

February 2018

<p>Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—...

Illustration of locus definitions as defined by flanking sequence landmarks (FSLs).

Brian Young (200156)
Jonathan L. King (4034357)
Bruce Budowle (322785)
Luigi Armogida (4034360)

May 2017

<p>The genomic sub-sequence between GRCh38/hg38 positions chr2:68,011,892 and chr2:68,012,004 includ...

rs1800925 genotyping by direct sequencing: (a) CC genotype; (b) CT genotype; (c) TT genotype.

Yan Deng (159032)
Ming Xie (420493)
Li Xie (108913)
Jian Wang (5901)
Taijie Li (519116)
Yu He (420536)
Ruolin Li (519115)
Shan Li (110392)
Xue Qin (123365)

February 2015

<p>rs1800925 genotyping by direct sequencing: (a) CC genotype; (b) CT genotype; (c) TT genotype.</p

rs20541 genotyping by direct sequencing: (a) GG genotype; (b) GA genotype; (c) AA genotype.

Yan Deng (159032)
Ming Xie (420493)
Li Xie (108913)
Jian Wang (5901)
Taijie Li (519116)
Yu He (420536)
Ruolin Li (519115)
Shan Li (110392)
Xue Qin (123365)

February 2015

<p>rs20541 genotyping by direct sequencing: (a) GG genotype; (b) GA genotype; (c) AA genotype.</p

Automated DNA sequencing and analysis of 106 kilobases from human chromosome 19q13.3

Martin-Gallardo, A.
McCombie, W. R.
Gocayne, J. D.
FitzGerald, M. G.
Wallace, S.
Lee, B. M. B.
Lamerdin, J.
Trapp, S.
Kelley, J. M.
Liu, L. I.
Dubnick, M.
Johnston-Dow, L. A.
Kerlavage, A. R.
De Jong, P.
Carrano, A.
Fields, C.
Venter, J. C.

January 1992

A total of 116,118 basepairs (bp) derived from three cosmids spanning the ERCC1 locus of human chrom...

MLH3 Thr942Ile, Pro844Leu genotypes and MLH3 mRNA expression level detection.

Feng Ye (173489)
Qi Cheng (46307)
Jiajie Shen (555045)
Caiyun Zhou (555046)
Huaizeng Chen (322620)

April 2014

<p>(<b>A</b>) Genomic DNA electrophoresis. M: Wide Range DNA Marker (500–15000); 1,2: Control; 3,4: ...

Sequence divergence and putative recombination sites at the locus in serotype D strains

Guanggan Hu (46968)
Iris Liu (46969)
Anita Sham (40813)
Jason E Stajich (2213)
Fred S Dietrich (2025)
James W Kronstad (40817)

December 2011

The chromosomal coordinates are shown at the top and the annotated genes in the region are indicated...

The pedigrees and automated sequencing traces of the <i>WISP3</i> gene mutations in the two families in our study.

Jing Sun (141206)
Weibo Xia (306610)
Shuli He (320106)
Zhen Zhao (159931)
Min Nie (306607)
Mei Li (217363)
Yan Jiang (12139)
Xiaoping Xing (306612)
Ou Wang (306605)
Xunwu Meng (306611)
Xueying Zhou (320107)

February 2013

<p>The pedigrees and automated sequencing traces of the <i>WISP3</i> gene mutations in the two famil...

The 16s RNA sequencing confirmed the strain LK3 is a novel species with G+C content of the isolated DNA at 57.29 mol%.

L. Karthik (533341)
Gaurav Kumar (344052)
Tarun Keswani (533342)
Arindam Bhattacharyya (533343)
S. Sarath Chandar (533344)
K. V. Bhaskara Rao (533345)

March 2014

<p>The 16s RNA sequencing confirmed the strain LK3 is a novel species with G+C content of the isolat...

ML tree based on 16S rRNA gene nucleotide sequences of strain PT1<sup>T</sup> and related type strains.

Rika Kudo (16834202)
Ryota Yamano (3389096)
Juanwen Yu (11865881)
Shotaro Koike (16834205)
Alfabetian Harjuno Condro Haditomo (11865878)
Mayanne A. M. de Freitas (12567628)
Jiro Tsuchiya (14095446)
Sayaka Mino (789010)
Fabiano Thompson (3631351)
Jesús L. Romalde (5712650)
Hisae Kasai (8034749)
Yuichi Sakai (11865884)
Tomoo Sawabe (627132)

August 2023

ML tree based on 16S rRNA gene nucleotide sequences of strain PT1T and related type strains.</p

A study of DNA identification using nonradioactive automated minisatellite variant repeat (MVR) digital typing

Jang, Gi Young

January 1993

The Minisatellite Variant Repeat (MVR) typing technique developed by Dr. Alec Jeffreys (Nature 354:2...

DNA sequence analysis of individuals from family-123.

Nivedita Singh (499697)
Pradeep Kallollimath (6667934)
Mohd Hussain Shah (2794834)
Saketh Kapoor (2794855)
Vishwanath Kumble Bhat (6667937)
Lakshminarayanapuram Gopal Viswanathan (6667940)
Madhu Nagappa (2794837)
Parayil S. Bindu (6667943)
Arun B. Taly (2794858)
Sanjib Sinha (2794840)
Arun Kumar (49927)

May 2019

(Upper panel) Sequencing chromatogram from the affected individual II-2 from family-123. Arrow marks...

Detection of genetic rearrangements in the regulators of complement activation RCA cluster by high-throughput sequencing and MLPA

García-Fernández, Jesús
Vilches-Arroyo, Susana
Olavarrieta, Leticia
Pérez Pérez, J.
Rodríguez de Córdoba, Santiago

April 2021

20 p.-6 fig.-3 tab.The regulators of complement activation (RCA) gene cluster in 1q31-1q32 includes ...

Sequence Genbank accession number for each haplotype found with the markers P-28S, P-ITS2, P-C1 and P-ITS2.

Thibaut Malausa (251819)
Mathilde Delaunay (3160293)
Alexandre Fleisch (3160308)
Géraldine Groussier-Bout (2916650)
Sylvie Warot (3160317)
Didier Crochard (378225)
Emilio Guerrieri (750341)
Gérard Delvare (3160290)
Giuseppina Pellizzari (3160302)
M. Bora Kaydan (3160299)
Nadia Al-Khateeb (3160311)
Jean-François Germain (604426)
Lisa Brancaccio (3160305)
Isabelle Le Goff (3160314)
Melissa Bessac (3160296)
Nicolas Ris (571703)
Philippe Kreiter (3160287)

June 2016

<p>Sequence Genbank accession number for each haplotype found with the markers P-28S, P-ITS2, P-C1 a...

Relationship between amount of genomic DNA isolated from H1975 and areas under the mutation peaks obtained by MBP-QP.

Naoko Sueoka-Aragane (402105)
Akemi Sato (402106)
Naomi Kobayashi (668288)
Masaru Ide (402107)
Masako Yokoo (668289)
Yumi Nagano (668290)
Eisaburo Sueoka (402104)
Seiji Okada (291179)
Shinya Kimura (247648)

December 2014

<p>The results of T790M (A, B) and L858R (C, D) are shown. The MBP-QP method for detection of T790M ...

Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—Serotype Asia1.

Lisbeth Ramirez-Carvajal (4813950)
Steven J. Pauszek (843771)
Zaheer Ahmed (2471398)
Umer Farooq (1607068)
Khalid Naeem (4813947)
Reed S. Shabman (278818)
Timothy B. Stockwell (249318)
Luis L. Rodriguez (358559)

February 2018

<p>Nucleotide variants called in sample 178-3 relative to ancestral 178-2 genome 97 d post-sampling—...

Illustration of locus definitions as defined by flanking sequence landmarks (FSLs).

Brian Young (200156)
Jonathan L. King (4034357)
Bruce Budowle (322785)
Luigi Armogida (4034360)

May 2017

<p>The genomic sub-sequence between GRCh38/hg38 positions chr2:68,011,892 and chr2:68,012,004 includ...