Species level CO1 dataset in nexus format for gene-tree dating of European Agabini

Sequence Capture Loci

Leaché, Adam D.
Wagner, Philipp
Linkem, Charles W.
Böhme, Wolfgang
Papenfuss, Theodore J.
Chong, Rebecca A.
Lavin, Brian R.
Bauer, Aaron M.
Nielsen, Stuart V.
Greenbaum, Eli
Rödel, Mark-Oliver
Schmitz, Andreas
LeBreton, Matthew
Ineich, Ivan
Chirio, Laurent
Ofori-Boateng, Caleb
Eniang, Edem A.
Baha El Din, Sherif
Lemmon, Alan R.
Burbrink, Frank T.

July 2014

Sequence capture loci (a.k.a. anchored phylogenomics data). The data are in Nexus format (partitione...

Phylogenetic tree of SMARCA1.

Lei Dai (261659)
Joseph Mugaanyi (13431120)
Tongyue Zhang (10067236)
Jingshu Tong (13833732)
Xingchen Cai (13807654)
Caide Lu (13431123)
Changjiang Lu (13833735)

September 2022

We obtained the phylogenetic tree of SMARCA1 in different species via COBALT of NCBI. COBALT, constr...

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex

Kawahara, Akito Y.
Breinholt, Jesse W.

June 2014

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex: Nexus file containing 465 genes for 26 taxa. See taxa...

Complete European Agabini dataset in tab-delimited text format with CO1 sequences, species names, unique ID, geographic origin and coordinates

Johannes Bergsten (31136)
David T. Bilton (127007)
Tomochika Fujisawa (3240885)
Miranda Elliott (3292509)
Michael T. Monaghan (351491)
Michael Balke (188490)
Lars Hendrich (230658)
Joja Geijer (3292506)
Jan Herrmann (1282659)
Garth N. Foster (2912330)
Ignacio Ribera (234254)
Anders N. Nilsson (367462)
Timothy G. Barraclough (41549)
Alfried P. Vogler (69119)

November 2016

Tab-delimited text file with the following fields; BMNH numberFamilySubfamilyGenusSpeciesNameStateCo...

Thorpe et al phylogenetic data in nexus format

Roger S. Thorpe (249522)
Axel Barlow (3201252)
Anita Malhotra (359153)
Yann Surget-Groba (149543)

November 2016

Zipped file containing individual data files for all species used, names by species and gene name, i...

Genetic_Data

Danielle L. Edwards (816683)
Jane Melville (606274)
Leo Joseph (114181)
J. Scott Keogh (302800)

October 2016

Genetic data used for species tree estimation (6 genes - focal group only) and ND2 rate of substitut...

NEXUS file describing the taxonomic relationships of the 466 species for which genome sequencing was underway at Tree of Life, Wellcome Sanger Institute, at 31 December 2020

Blaxter, Mark

January 2021

This NEXUS file shows the taxonomic relationships of 466 species of eukaryote. The taxonomy derives ...

nexus tree file - RAG1

John R. Hyde (3263517)
Karen E. Underkoffler (3263511)
Meagan A. Sundberg (3263514)

October 2016

Treefile in nexus format containing data for RAG1 haplotypes from Lampris guttatus and Regalecus gl...

*BEAST species tree 18nc + 2mt DNA Sanger markers (Fig 2a)

Stervander, Martin

March 2015

Tree file for Figure 2a, 18 nuclear and 2 mitochondrial Sanger sequence markers. The tree is in nexu...

Chronogram of the Labridae family

Gaboriau, Théo
Leprieur, Fabien
Mouillot, David
Hubert, Nicolas

October 2017

This file contains the consensus chronogram of the Labridae family in the nexus format

nexus tree file - COI

Hyde, John R.
Underkoffler, Karen E.
Sundberg, Meagan A.

April 2014

Treefile in nexus format containing data for 82 cytochrome c oxidase haplotypes from Lampris guttat...

Laurin et al. SOM1

Michel Laurin (138757)
Sander W.S. Gussekloo (3272373)
David Marjanovic (3272376)
Lucas Legendre (3272379)
Jorge Cubo (767040)

October 2016

Species-level data file with character data and phylogenies. In NEXUS format, but may be read by any...

Kawahara_Breinholt_2014_46taxa_2696loci_aa.nex

Akito Y. Kawahara (263501)
Jesse W. Breinholt (121808)

October 2016

Kawahara_Breinholt_2014_46taxa_2696loci_aa.nex: Nexus file containing 2969 genes for 46 taxa. See ta...

Sequence capture data (471 complete loci)

Adam D. Leaché (203188)
Andreas S. Chavez (3318294)
Leonard N. Jones (3326271)
Jared A. Grummer (3266310)
Andrew D. Gottscho (3197160)
Charles W. Linkem (3246228)

November 2016

A subset of the sequence capture loci that were captured for all species included in the study. The ...

phylogeny

Stefan Lüpold (3240744)

October 2016

Phylogeny in NEXUS format, associated with dataset, based on combined molecular phylogenies (for ref...

Sequence Capture Loci

Leaché, Adam D.
Wagner, Philipp
Linkem, Charles W.
Böhme, Wolfgang
Papenfuss, Theodore J.
Chong, Rebecca A.
Lavin, Brian R.
Bauer, Aaron M.
Nielsen, Stuart V.
Greenbaum, Eli
Rödel, Mark-Oliver
Schmitz, Andreas
LeBreton, Matthew
Ineich, Ivan
Chirio, Laurent
Ofori-Boateng, Caleb
Eniang, Edem A.
Baha El Din, Sherif
Lemmon, Alan R.
Burbrink, Frank T.

July 2014

Sequence capture loci (a.k.a. anchored phylogenomics data). The data are in Nexus format (partitione...

Phylogenetic tree of SMARCA1.

Lei Dai (261659)
Joseph Mugaanyi (13431120)
Tongyue Zhang (10067236)
Jingshu Tong (13833732)
Xingchen Cai (13807654)
Caide Lu (13431123)
Changjiang Lu (13833735)

September 2022

We obtained the phylogenetic tree of SMARCA1 in different species via COBALT of NCBI. COBALT, constr...

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex

Kawahara, Akito Y.
Breinholt, Jesse W.

June 2014

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex: Nexus file containing 465 genes for 26 taxa. See taxa...

Complete European Agabini dataset in tab-delimited text format with CO1 sequences, species names, unique ID, geographic origin and coordinates

Johannes Bergsten (31136)
David T. Bilton (127007)
Tomochika Fujisawa (3240885)
Miranda Elliott (3292509)
Michael T. Monaghan (351491)
Michael Balke (188490)
Lars Hendrich (230658)
Joja Geijer (3292506)
Jan Herrmann (1282659)
Garth N. Foster (2912330)
Ignacio Ribera (234254)
Anders N. Nilsson (367462)
Timothy G. Barraclough (41549)
Alfried P. Vogler (69119)

November 2016

Tab-delimited text file with the following fields; BMNH numberFamilySubfamilyGenusSpeciesNameStateCo...

Thorpe et al phylogenetic data in nexus format

Roger S. Thorpe (249522)
Axel Barlow (3201252)
Anita Malhotra (359153)
Yann Surget-Groba (149543)

November 2016

Zipped file containing individual data files for all species used, names by species and gene name, i...

Genetic_Data

Danielle L. Edwards (816683)
Jane Melville (606274)
Leo Joseph (114181)
J. Scott Keogh (302800)

October 2016

Genetic data used for species tree estimation (6 genes - focal group only) and ND2 rate of substitut...

NEXUS file describing the taxonomic relationships of the 466 species for which genome sequencing was underway at Tree of Life, Wellcome Sanger Institute, at 31 December 2020

Blaxter, Mark

January 2021

This NEXUS file shows the taxonomic relationships of 466 species of eukaryote. The taxonomy derives ...

nexus tree file - RAG1

John R. Hyde (3263517)
Karen E. Underkoffler (3263511)
Meagan A. Sundberg (3263514)

October 2016

Treefile in nexus format containing data for RAG1 haplotypes from Lampris guttatus and Regalecus gl...

*BEAST species tree 18nc + 2mt DNA Sanger markers (Fig 2a)

Stervander, Martin

March 2015

Tree file for Figure 2a, 18 nuclear and 2 mitochondrial Sanger sequence markers. The tree is in nexu...

Chronogram of the Labridae family

Gaboriau, Théo
Leprieur, Fabien
Mouillot, David
Hubert, Nicolas

October 2017

This file contains the consensus chronogram of the Labridae family in the nexus format

nexus tree file - COI

Hyde, John R.
Underkoffler, Karen E.
Sundberg, Meagan A.

April 2014

Treefile in nexus format containing data for 82 cytochrome c oxidase haplotypes from Lampris guttat...

Laurin et al. SOM1

Michel Laurin (138757)
Sander W.S. Gussekloo (3272373)
David Marjanovic (3272376)
Lucas Legendre (3272379)
Jorge Cubo (767040)

October 2016

Species-level data file with character data and phylogenies. In NEXUS format, but may be read by any...

Kawahara_Breinholt_2014_46taxa_2696loci_aa.nex

Akito Y. Kawahara (263501)
Jesse W. Breinholt (121808)

October 2016

Kawahara_Breinholt_2014_46taxa_2696loci_aa.nex: Nexus file containing 2969 genes for 46 taxa. See ta...

Sequence capture data (471 complete loci)

Adam D. Leaché (203188)
Andreas S. Chavez (3318294)
Leonard N. Jones (3326271)
Jared A. Grummer (3266310)
Andrew D. Gottscho (3197160)
Charles W. Linkem (3246228)

November 2016

A subset of the sequence capture loci that were captured for all species included in the study. The ...

phylogeny

Stefan Lüpold (3240744)

October 2016

Phylogeny in NEXUS format, associated with dataset, based on combined molecular phylogenies (for ref...

Sequence Capture Loci

Leaché, Adam D.
Wagner, Philipp
Linkem, Charles W.
Böhme, Wolfgang
Papenfuss, Theodore J.
Chong, Rebecca A.
Lavin, Brian R.
Bauer, Aaron M.
Nielsen, Stuart V.
Greenbaum, Eli
Rödel, Mark-Oliver
Schmitz, Andreas
LeBreton, Matthew
Ineich, Ivan
Chirio, Laurent
Ofori-Boateng, Caleb
Eniang, Edem A.
Baha El Din, Sherif
Lemmon, Alan R.
Burbrink, Frank T.

July 2014

Sequence capture loci (a.k.a. anchored phylogenomics data). The data are in Nexus format (partitione...

Phylogenetic tree of SMARCA1.

Lei Dai (261659)
Joseph Mugaanyi (13431120)
Tongyue Zhang (10067236)
Jingshu Tong (13833732)
Xingchen Cai (13807654)
Caide Lu (13431123)
Changjiang Lu (13833735)

September 2022

We obtained the phylogenetic tree of SMARCA1 in different species via COBALT of NCBI. COBALT, constr...

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex

Kawahara, Akito Y.
Breinholt, Jesse W.

June 2014

Kawahara_Breinholt_2014_26taxa_465loci_aa.nex: Nexus file containing 465 genes for 26 taxa. See taxa...

Species level CO1 dataset in nexus format for gene-tree dating of European Agabini

Abstract

Extracted data

Species level CO1 dataset in nexus format for gene-tree dating of European Agabini

Abstract

Extracted data

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