<p>16 patient derived viruses and 6 culture viruses divided into three groups according to the sequence of the E1E2 analyzed in a phylogenetic tree (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0062674#pone-0062674-g007" target="_blank">Figure 7</a>). The clusters are marked by different colors of the names of the samples and viruses, including a box framing the viruses in the cluster. Blue = genotype 1b, cluster 1; Red = genotype 1a, cluster 2; Green = genotype 1a, cluster 3. Only plasma samples with NAb<sub>50</sub>-titer ≥100 against genotype 1a viruses (green squares) and genotype 1b viruses (grey squares) are shown. The patient number is written in the squares and the titer against the virus is written in p...
<p>The reference strains were selected based on geographical and chronological distributions. The ph...
<p>Phylogenetic tree for the HA gene (AA based) as well as the results on the genetic analyses of th...
An inoculum-rooted maximum likelihood tree was created using PhyML. Branch lengths are proportional ...
<p>The analysis includes the E1E2-sequences (nts. 915–2579; GenBank accession number AF009606) of 16...
<p>The phylogenetic trees were generated using the P1 (A), VP1 (B) and VP1+VP3 (C) sequences. Virus ...
<p>The 40 <i>env</i> sequences of the early/transmitted viruses included in our study were aligned w...
<p>Viral sequences from both compartments were aligned with the complete set of reference sequences ...
<p>Each of the G1, G2 and G9 genotype viruses from this study are indicated with round circle, while...
<p>Phylogenetic tree based on 11 nucleotide sequences of 1140 nt of the NoV capsid gene. All sequenc...
<p>Backgrounds of the EV71 viruses genotyped in this study and the reference viruses were provided i...
<p>Virus name (abbreviation) and GenBank accession numbers are as follows: Avian paramyxovirus 6 (AP...
<p>Genetic groups where viruses from the UK clustered are highlighted in green (I) and red (II). Som...
<p>All capsid sequences (first sample per patient) were aligned and a Neighbor Joining tree was cons...
<p>The phylogenetic trees were constructed using the Maximum likelihood method with 1000 bootstrap r...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The reference strains were selected based on geographical and chronological distributions. The ph...
<p>Phylogenetic tree for the HA gene (AA based) as well as the results on the genetic analyses of th...
An inoculum-rooted maximum likelihood tree was created using PhyML. Branch lengths are proportional ...
<p>The analysis includes the E1E2-sequences (nts. 915–2579; GenBank accession number AF009606) of 16...
<p>The phylogenetic trees were generated using the P1 (A), VP1 (B) and VP1+VP3 (C) sequences. Virus ...
<p>The 40 <i>env</i> sequences of the early/transmitted viruses included in our study were aligned w...
<p>Viral sequences from both compartments were aligned with the complete set of reference sequences ...
<p>Each of the G1, G2 and G9 genotype viruses from this study are indicated with round circle, while...
<p>Phylogenetic tree based on 11 nucleotide sequences of 1140 nt of the NoV capsid gene. All sequenc...
<p>Backgrounds of the EV71 viruses genotyped in this study and the reference viruses were provided i...
<p>Virus name (abbreviation) and GenBank accession numbers are as follows: Avian paramyxovirus 6 (AP...
<p>Genetic groups where viruses from the UK clustered are highlighted in green (I) and red (II). Som...
<p>All capsid sequences (first sample per patient) were aligned and a Neighbor Joining tree was cons...
<p>The phylogenetic trees were constructed using the Maximum likelihood method with 1000 bootstrap r...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The reference strains were selected based on geographical and chronological distributions. The ph...
<p>Phylogenetic tree for the HA gene (AA based) as well as the results on the genetic analyses of th...
An inoculum-rooted maximum likelihood tree was created using PhyML. Branch lengths are proportional ...