01_ML_phylogeny.zip

This file contains all the data necessary to re-run our ML tree using the full alignmentcontaining all 564 species. There are 5 files. 'burleigh_concat.phy' is the alignment file in phylip format. 'commandline' is the commandline we used to run RAxML version 7. 'partitions' describes how we partitioned our data (RAxML uses that file). 'RAxML_result.burleigh_concat.raxml.out' has the tree file that results from our analysis. 'raxmlHPC' is the raxml executable we used to run our analyses, on a Mac desktop computer