<p>Italicized rows correspond to values of approximated from real cancer datasets. Each entry is mean () and standard deviation () (across 1000 simulations) of the distance between the planted set of pathways and the collections found by each algorithm. The minimum distance indicates an algorithm found the planted pathways exactly, while the maximum distance indicates that an algorithm did not find <i>any</i> of the genes in the planted pathways. Bold text indicates the top performing algorithm for each value of . Multi-Dendrix is the top performer for all values of except the smallest . The differences between Multi-Dendrix and both Iter-Dendrix and Iter-RME are statistically significant () for . For , Iter-RME did not complete afte...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
<p>(A) the frequency (blue) and GERP score (red) distribution across the 528 mutations in TCGA BRCA ...
<p>Runtimes for each algorithm are reported as the mean runtime of 10 runs for each value of . Note ...
Understanding genetic events that lead to cancer initiation and progression remains one of the bigge...
<p>(A) The extent of DC compared to random gene sets. For each discovered module and module pair we ...
<p>The area under the ROC curve (AUC) values shown were computed from 100 simulations for each setti...
<p>(A) The MI algorithm, consisting of weighting function and ; (B) The unweighted SCA algorithm, c...
<p>The ratio of the mean squared error (MSE) of the RR estimate to that of the MAP estimator is plot...
Copyright © 2014 Hai-Tao Li et al. This is an open access article distributed under the Creative Com...
<p>(<b>A</b>) A simulated tumor. Different colors represent different clones. White rectangles label...
<p>In the nqueensnomut, nqueensconstmut, and nqueenssigmoid tabs, the end heuristic (number of queen...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
The significant improvements in throughput and quality of DNA sequencing technology have revolutioni...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
<p>(A) the frequency (blue) and GERP score (red) distribution across the 528 mutations in TCGA BRCA ...
<p>Runtimes for each algorithm are reported as the mean runtime of 10 runs for each value of . Note ...
Understanding genetic events that lead to cancer initiation and progression remains one of the bigge...
<p>(A) The extent of DC compared to random gene sets. For each discovered module and module pair we ...
<p>The area under the ROC curve (AUC) values shown were computed from 100 simulations for each setti...
<p>(A) The MI algorithm, consisting of weighting function and ; (B) The unweighted SCA algorithm, c...
<p>The ratio of the mean squared error (MSE) of the RR estimate to that of the MAP estimator is plot...
Copyright © 2014 Hai-Tao Li et al. This is an open access article distributed under the Creative Com...
<p>(<b>A</b>) A simulated tumor. Different colors represent different clones. White rectangles label...
<p>In the nqueensnomut, nqueensconstmut, and nqueenssigmoid tabs, the end heuristic (number of queen...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
Simulated data used in the driverMAPS paper: Zhao, S. et al. Model-based analysis of positive sele...
The significant improvements in throughput and quality of DNA sequencing technology have revolutioni...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
© 2018 The Author(s). Motivation Understanding the mutational processes that act during cancer devel...
<p>(A) the frequency (blue) and GERP score (red) distribution across the 528 mutations in TCGA BRCA ...