<p>To generate the split-network, single nucleotide variants in concatenated multiple alignments of <i>S. pneumoniae</i> core genome coding sequences were input to a Neighbour-Net analysis in SplitsTree. Strains sequenced in this study are coloured in green. The serotype of each strain is shown in parenthesis.</p
<p>(a) the partial 5′UTR, (b) partial VP1, and (c) partial VP4/VP2. EV68 strains in this study are i...
<p>The HSV-1 strains in the network form the same six clades as in <a href="http://www.plosone.org/a...
<p><b>(A)</b> WGS reads of a mixed infection by strain A and B were mapped to the ANC<sub><i>0</i></...
<p>The tree was constructed using raw data from the microarrays to visualize the distribution of the...
<p>SplitsTree v4 NeigborNet analysis of 77 <i>V. parahaemolyticus</i> isolates based on 7 concatenat...
<p>Phylogenetic analysis of SNP extracted from whole genome alignment of the three MPEC strains (VL2...
A) Unrooted tree of 28 different L. pneumophila sequence types, including the ST1 clade (collapsed r...
The tree includes all strains of S. pneumoniae, S. pseudopneumoniae, S. mitis, including the experim...
<p>A phylogenetic tree was constructed from multiple alignment of the core genome SNPs of the 6 isol...
<p>(A) SNP-based Neighbor-joining phylogenetic tree. The tree was generated using 14,092 polymorphic...
<p>This representation allows inferring more complex interactions among the strains than goeBURST. T...
<p><i>P</i>. <i>aeruginosa</i> isolates (n = 59 STs). Black points represent sequence types (STs); l...
<p>The tree was constructed using Neighbor-Joining algorithm in SplitsTree4 using MLST allelic profi...
<div><p>Multi-Locus Sequence Typing (MLST) of <i>Streptococcus pneumoniae</i> is based on the sequen...
Multi-Locus Sequence Typing (MLST) of Streptococcus pneumoniae is based on the sequence of seven hou...
<p>(a) the partial 5′UTR, (b) partial VP1, and (c) partial VP4/VP2. EV68 strains in this study are i...
<p>The HSV-1 strains in the network form the same six clades as in <a href="http://www.plosone.org/a...
<p><b>(A)</b> WGS reads of a mixed infection by strain A and B were mapped to the ANC<sub><i>0</i></...
<p>The tree was constructed using raw data from the microarrays to visualize the distribution of the...
<p>SplitsTree v4 NeigborNet analysis of 77 <i>V. parahaemolyticus</i> isolates based on 7 concatenat...
<p>Phylogenetic analysis of SNP extracted from whole genome alignment of the three MPEC strains (VL2...
A) Unrooted tree of 28 different L. pneumophila sequence types, including the ST1 clade (collapsed r...
The tree includes all strains of S. pneumoniae, S. pseudopneumoniae, S. mitis, including the experim...
<p>A phylogenetic tree was constructed from multiple alignment of the core genome SNPs of the 6 isol...
<p>(A) SNP-based Neighbor-joining phylogenetic tree. The tree was generated using 14,092 polymorphic...
<p>This representation allows inferring more complex interactions among the strains than goeBURST. T...
<p><i>P</i>. <i>aeruginosa</i> isolates (n = 59 STs). Black points represent sequence types (STs); l...
<p>The tree was constructed using Neighbor-Joining algorithm in SplitsTree4 using MLST allelic profi...
<div><p>Multi-Locus Sequence Typing (MLST) of <i>Streptococcus pneumoniae</i> is based on the sequen...
Multi-Locus Sequence Typing (MLST) of Streptococcus pneumoniae is based on the sequence of seven hou...
<p>(a) the partial 5′UTR, (b) partial VP1, and (c) partial VP4/VP2. EV68 strains in this study are i...
<p>The HSV-1 strains in the network form the same six clades as in <a href="http://www.plosone.org/a...
<p><b>(A)</b> WGS reads of a mixed infection by strain A and B were mapped to the ANC<sub><i>0</i></...