<p>(<b>A</b>) Sequence logos were constructed for each of the four nucleotides facing the respective S2 domains in the predicted PPR-RNA interaction at position –4 relative to the edited C (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0065343#pone-0065343-g001" target="_blank">Figure 1</a>). Coincidences between nucleotide and amino acid identities are seen for position 1′ (also labelled as amino acid 33). No coinciding amino acid preference is seen with the C nucleotide. (<b>B</b>) The amino acid identity at position 1′ shows the most prominent correlation between D (aspartic acid) and nucleotide G, N (asparagine) and A, T (threonine) and U. In the bar diagram, percentages of nucleotide identities coinciding with t...
<p>(<b>A</b>) For MEF11 (At4g14850), the RNA editing sites ranked at positions 1, 2 and 3 out of 430...
The pentatricopeptide repeat (PPR) is a helical repeat motif found in an exceptionally large family ...
<p>The prediction tool derived from nucleotide–amino acid coincidences between a given PPR element a...
<p>(<b>A</b>) Correlations between amino acid and respective nucleotide identities in the target RNA...
<p>Potential NSRs were computationally surveyed by estimating the low variability in the association...
<p>The RNA editing PPR proteins are extended at their C-termini by E and often also by DYW domains. ...
<p>(<b>A</b>) Consensus amino acids for the PPR motif. The sequence logo was derived from 5668 indiv...
<p>Motif pairs from PPR10, HCF152, CRP1 and 37 RNA editing factors flanking the indicated nucleotide...
<p>The analysis was initiated from the established PPR motif model of a protein of interest, PpPPR_7...
<p>(A) Statistically optimal alignments between amino acids at positions 6 (blue) and 1′ (red) in PP...
Pentatricopeptide repeat (PPR) proteins with an E domain have been identified as specific factors fo...
Pentatricopeptide repeat (PPR) proteins are helical-repeat proteins that bind RNAs through a simple ...
Pentatricopeptide repeat (PPR) proteins are eukaryotic RNA-binding proteins that are commonly found ...
<p>PPR protein structure and the mechanism of transcript recognition. Each PPR motif forms two α-hel...
<p>Nucleotides aligned with each 6/1′ combination in the alignments in <a href="http://www.plosgenet...
<p>(<b>A</b>) For MEF11 (At4g14850), the RNA editing sites ranked at positions 1, 2 and 3 out of 430...
The pentatricopeptide repeat (PPR) is a helical repeat motif found in an exceptionally large family ...
<p>The prediction tool derived from nucleotide–amino acid coincidences between a given PPR element a...
<p>(<b>A</b>) Correlations between amino acid and respective nucleotide identities in the target RNA...
<p>Potential NSRs were computationally surveyed by estimating the low variability in the association...
<p>The RNA editing PPR proteins are extended at their C-termini by E and often also by DYW domains. ...
<p>(<b>A</b>) Consensus amino acids for the PPR motif. The sequence logo was derived from 5668 indiv...
<p>Motif pairs from PPR10, HCF152, CRP1 and 37 RNA editing factors flanking the indicated nucleotide...
<p>The analysis was initiated from the established PPR motif model of a protein of interest, PpPPR_7...
<p>(A) Statistically optimal alignments between amino acids at positions 6 (blue) and 1′ (red) in PP...
Pentatricopeptide repeat (PPR) proteins with an E domain have been identified as specific factors fo...
Pentatricopeptide repeat (PPR) proteins are helical-repeat proteins that bind RNAs through a simple ...
Pentatricopeptide repeat (PPR) proteins are eukaryotic RNA-binding proteins that are commonly found ...
<p>PPR protein structure and the mechanism of transcript recognition. Each PPR motif forms two α-hel...
<p>Nucleotides aligned with each 6/1′ combination in the alignments in <a href="http://www.plosgenet...
<p>(<b>A</b>) For MEF11 (At4g14850), the RNA editing sites ranked at positions 1, 2 and 3 out of 430...
The pentatricopeptide repeat (PPR) is a helical repeat motif found in an exceptionally large family ...
<p>The prediction tool derived from nucleotide–amino acid coincidences between a given PPR element a...