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The correlation of fold changes in gene expression between the RNA seq and qRT-PCR.

Hyun-Jeong Lee (386284)
Mi Jang (425014)
Hyeongmin Kim (425015)
Woori Kwak (425016)
WonCheoul Park (231024)
Jae Yeon Hwang (306770)
Chang-Kyu Lee (48245)
Gul Won Jang (425017)
Mi Na Park (425018)
Hyeong-Cheol Kim (425019)
Jin Young Jeong (425020)
Kang Seok Seo (39499)
Heebal Kim (9991)
Seoae Cho (75685)
Bo-Young Lee (425021)

Publication date

June 2013

DOI

10.1371/journal.pone.0066267.g002

Abstract

<p>The correlation of fold changes in gene expression between the RNA seq and qRT-PCR.</p

Extracted data

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Correlation between the gene expression ratios obtained from RNA-Seq data and qRT-PCR.

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<p>(A) Expression ratios (Log<sub>2</sub><sup>FC</sup>) obtained by RNA-seq and qRT-PCR. The express...

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<p>(A) Distribution of fold changes in gene expression (<i>y-axis</i>, log<sub>2</sub> scale) for ge...

Correlation between RNA-Seq and qRT-PCR data of selected genes from the list of the up regulated transcripts.

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<p>Correlations of log2 fold-change between RNA-seq FPKM and Nanostring gene count.</p

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Correlation between results of RNA-seq and qRT-PCR.

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<p>(A) The fold-change values from the mRNA-seq data (x-axis) are plotted against the fold change va...

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Expression pattern of the selected genes by RT-qPCR and RNA-seq analysis.

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Comparison of relative gene expression fold in transcriptome data and qPCR results.

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<p>Comparison of relative gene expression fold in transcriptome data and qPCR results.</p

Correlation between the gene expression ratios obtained from RNA-Seq data and qRT-PCR.

Jun Duan (47223)
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<p>(A) Expression ratios (Log<sub>2</sub><sup>FC</sup>) obtained by RNA-seq and qRT-PCR. The express...

Correlation of expression levels as obtained from 454 sequencing with those obtained with qRT-PCR.

Martin Heil (161711)
Enrique Ibarra-Laclette (123694)
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Octavio Martínez (184407)
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<p>Correlation of expression levels as obtained from 454 sequencing with those obtained with qRT-PCR...

Relationship between RNA processing changes and gene expression changes.

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<p>(A) Distribution of fold changes in gene expression (<i>y-axis</i>, log<sub>2</sub> scale) for ge...

Correlation between RNA-Seq and qRT-PCR data of selected genes from the list of the up regulated transcripts.

Lucy Mackenzie-Impoinvil (6278108)
Gareth D. Weedall (215713)
Juan C. Lol (6278111)
Jesús Pinto (6278114)
Lucrecia Vizcaino (6278117)
Nicole Dzuris (6278120)
Jacob Riveron (3440567)
Norma Padilla (44896)
Charles Wondji (3419594)
Audrey Lenhart (354002)

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Correlation between RNA-Seq and qRT-PCR data of selected genes from the list of the up regulated tra...

Correlations of log2 fold-change between RNA-seq FPKM and Nanostring gene count.

Zhu Zhuo (144210)
Susan J. Lamont (114962)
William R. Lee (785739)
Behnam Abasht (785740)

August 2015

<p>Correlations of log2 fold-change between RNA-seq FPKM and Nanostring gene count.</p

RT-qPCR and RNA-seq fold change values are highly correlated.

Anna V. Protasio (188679)
David W. Dunne (115501)
Matthew Berriman (5353)

March 2013

<p>Bar plots and inset scatter plot show a comparison of RNA-seq and RT-qPCR fold change values obta...

Correlation between results of RNA-seq and qRT-PCR.

Yang Yang (45629)
Huiqiang Zhou (2307310)
Hu Shu (6523742)
Dongming Zhong (6523745)
Mingqing Zhang (6523748)
Jun Hong Xia (227718)

March 2019

a and b represent correlations between control and fasting groups, and between control and refeeding...

Correlation graphs of the fold change of the 18 genes selected from the mRNA-seq platform.

Piya Lahiry (343400)
Leo J. Lee (343401)
Brendan J. Frey (343402)
C. Anthony Rupar (343403)
Victoria M. Siu (343404)
Benjamin J. Blencowe (248803)
Robert A. Hegele (113679)

February 2013

<p>(A) The fold-change values from the mRNA-seq data (x-axis) are plotted against the fold change va...

Comparison of gene expression values obtained by RNA-seq and RT-qPCR.

Cunmin Qu (404978)
Fuyou Fu (835477)
Miao Liu (148274)
Huiyan Zhao (835478)
Chuan Liu (367528)
Jiana Li (182502)
Zhanglin Tang (769589)
Xinfu Xu (835479)
Xiao Qiu (835480)
Rui Wang (52434)
Kun Lu (404977)

December 2015

<p>Fold changes were calculated for 42 DEGs and a high correlation (R<sup>2</sup> > 0.93) was observ...

Correlation between RNAseq and qPCR data from 5 genes at different time points.

Cristina Ballesteros (344378)
Lucienne Tritten (336564)
Maeghan O’Neill (842300)
Erica Burkman (599786)
Weam I. Zaky (842301)
Jianguo Xia (229883)
Andrew Moorhead (599787)
Steven A. Williams (187671)
Timothy G. Geary (199558)

January 2016

<p>Fold-change values of the selected genes are displayed in <a href="http://www.plosntds.org/articl...

Correlation between RNA-Seq and qRT-PCR data of selected genes.

Yujie Mao (696356)
Lidan Xiong (696357)
Siyu Wang (696358)
Jianqiao Zhong (696359)
Rongying Zhou (696360)
Li Li (14993)

February 2015

<p>Pearson correlation coefficient(r = 0.960) was used to determine the similarity in gene expressio...

Expression pattern of the selected genes by RT-qPCR and RNA-seq analysis.

Jun Yang (2084)
Xiaorong Chen (459651)
Changlan Zhu (841292)
Xiaosong Peng (841293)
Xiaopeng He (841294)
Junru Fu (841295)
Linjuan Ouyang (841296)
Jianmin Bian (381692)
Lifang Hu (841297)
Xiaotang Sun (841298)
Jie Xu (34477)
Haohua He (841299)

January 2016

<p>(A) Gene expression data for RNA-seq analysis. (B) The RT-qPCR analysis of gene expression data. ...

qRT-PCR validation of gene expression changes, expressed as fold-change (FC) relative to 0 mM Se.

Christopher J. Boehler (442283)
Anna M. Raines (442284)
Roger A. Sunde (442285)

June 2014

<p>qRT-PCR validation of gene expression changes, expressed as fold-change (FC) relative to 0 mM Se....

Comparison of 13 differentially expressed genes from RNASeq and qRT- PCR.

Yanhong Xiao (839890)
Yonghua Wu (839891)
Keping Sun (443670)
Hui Wang (30400)
Bing Zhang (129)
Shuhui Song (36514)
Zhenglin Du (416307)
Tinglei Jiang (443673)
Limin Shi (839892)
Lei Wang (6656)
Aiqing Lin (839893)
Xinke Yue (771470)
Chenji Li (839894)
Tingting Chen (111216)
Jiang Feng (286772)

January 2016

<p>(A) 13 genes expression from qRT-PCR. Results respresent mean + S.E.M. (N = 5) (B) 13 genes expre...

Comparison of relative gene expression fold in transcriptome data and qPCR results.

Shihao Li (391352)
Xiaojun Zhang (178074)
Zheng Sun (261083)
Fuhua Li (195912)
Jianhai Xiang (195916)

March 2013

<p>Comparison of relative gene expression fold in transcriptome data and qPCR results.</p

Correlation between the gene expression ratios obtained from RNA-Seq data and qRT-PCR.

Jun Duan (47223)
Tim Ladd (779926)
Daniel Doucet (281456)
Michel Cusson (248211)
Kees vanFrankenhuyzen (779927)
Omprakash Mittapalli (232469)
Peter J. Krell (779928)
Guoxing Quan (779929)

August 2015

<p>(A) Expression ratios (Log<sub>2</sub><sup>FC</sup>) obtained by RNA-seq and qRT-PCR. The express...

Correlation of expression levels as obtained from 454 sequencing with those obtained with qRT-PCR.

Martin Heil (161711)
Enrique Ibarra-Laclette (123694)
Rosa M. Adame-Álvarez (184404)
Octavio Martínez (184407)
Enrique Ramirez-Chávez (184411)
Jorge Molina-Torres (184415)
Luis Herrera-Estrella (123696)

February 2012

<p>Correlation of expression levels as obtained from 454 sequencing with those obtained with qRT-PCR...

Relationship between RNA processing changes and gene expression changes.

Athma A. Pai (119315)
Golshid Baharian (3186786)
Ariane Pagé Sabourin (3186792)
Jessica F. Brinkworth (3186795)
Yohann Nédélec (433064)
Joseph W. Foley (254604)
Jean-Christophe Grenier (3186789)
Katherine J. Siddle (707195)
Anne Dumaine (457931)
Vania Yotova (489390)
Zachary P. Johnson (451758)
Robert E. Lanford (206807)
Christopher B. Burge (61242)
Luis B. Barreiro (235196)

September 2016

<p>(A) Distribution of fold changes in gene expression (<i>y-axis</i>, log<sub>2</sub> scale) for ge...