Venn diagram of the four differential expression methods in the <i>B. cereus</i> dataset.

<p>Transcript abundances were identified as differential as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0067019#pone-0067019-g005" target="_blank">Figure 5</a>. The overlap between the number of differentially expressed transcripts for each method is given in the individual cells of the diagram. The number of differentially regulated transcripts for each method is: ALDEx 1614, DESeq 1587, edgeR 1393, CuffDiff 1465. The diagram was prepared using the Venny web tool(Available: <a href="http://bioinfogp.cnb.csic.es/tools/venny" target="_blank">http://bioinfogp.cnb.csic.es/tools/venny</a>. Accessed May 23, 2013) <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0067019#pone.0067019-Oliveros1" target="_blank">[57]</a>.