<p>The top figure shows the result for <i>Scenario</i> 3, and the bottom one <i>Scenario</i> 4.</p
The natural logarithm of the posterior probability of the phylogenies, given the trait states of spe...
<p>Bayesian posterior probabilities of species supports were taken from the posterior distributions ...
<p>Numbers on branches indicate estimated posterior clade probabilities (in % units) ± Monte Carlo e...
<p>The top figure corresponds to the posterior distribution of gene with effect size , and second fi...
<p>The top figure corresponds to the posterior probabilities of gene selection with effect size , an...
<p>Posterior probability of the selected scenarios and confidence in scenario choice in the ABC anal...
<p>The posterior probability value of 0.5 is indicated by the red dashed line in each plot.</p
<p>The red dots highlight posterior probabilities of genes which are claimed by the model to show re...
FIGURE S4. The effects of species-specific positive selection on posterior probabilities of species ...
The natural logarithm of the posterior probability of the phylogenies, given the trait states of spe...
<p>Black dots highlight posterior probabilities of genes which are claimed by the model to show join...
FIGURE S3. The effects of species-specific positive selection on posterior probabilities of species ...
<p>Posterior probabilities (Ln <i>P</i>(D)) from six parallel calculations for each hypothetic numbe...
<p>The calculated SLAC d<i>N</i>/d<i>S</i> and REC posterior probability for positive selection (d<i...
<p>Heat-map of the posterior probabilities of differential expression in the silencing experiments. ...
The natural logarithm of the posterior probability of the phylogenies, given the trait states of spe...
<p>Bayesian posterior probabilities of species supports were taken from the posterior distributions ...
<p>Numbers on branches indicate estimated posterior clade probabilities (in % units) ± Monte Carlo e...
<p>The top figure corresponds to the posterior distribution of gene with effect size , and second fi...
<p>The top figure corresponds to the posterior probabilities of gene selection with effect size , an...
<p>Posterior probability of the selected scenarios and confidence in scenario choice in the ABC anal...
<p>The posterior probability value of 0.5 is indicated by the red dashed line in each plot.</p
<p>The red dots highlight posterior probabilities of genes which are claimed by the model to show re...
FIGURE S4. The effects of species-specific positive selection on posterior probabilities of species ...
The natural logarithm of the posterior probability of the phylogenies, given the trait states of spe...
<p>Black dots highlight posterior probabilities of genes which are claimed by the model to show join...
FIGURE S3. The effects of species-specific positive selection on posterior probabilities of species ...
<p>Posterior probabilities (Ln <i>P</i>(D)) from six parallel calculations for each hypothetic numbe...
<p>The calculated SLAC d<i>N</i>/d<i>S</i> and REC posterior probability for positive selection (d<i...
<p>Heat-map of the posterior probabilities of differential expression in the silencing experiments. ...
The natural logarithm of the posterior probability of the phylogenies, given the trait states of spe...
<p>Bayesian posterior probabilities of species supports were taken from the posterior distributions ...
<p>Numbers on branches indicate estimated posterior clade probabilities (in % units) ± Monte Carlo e...
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