Electron density difference maps.

2Fo-Fc electron density distributions for each of the 18 new beta-turn types, plus two examples from the Other category.

Maxim Shapovalov (365188)
Slobodan Vucetic (3506393)
Roland L. Dunbrack Jr. (431730)

March 2019

The PDB entries and other data for each turn are given in BetaTurnLib18 (S1 Table and S1 Text). Cont...

Electron density maps of d(ATTAAT)2.

Francisco J. Acosta-Reyes (703677)
Elida Alechaga (703678)
Juan A. Subirana (164308)
J. Lourdes Campos (164312)

March 2015

2Fo-Fc electron density maps at 1σ level, with Refmac5 map sharpening [<a href="http://www.ploson...

Electron density is shown around Cys136 in smPncA (A,C,E,G) and Cys264 in Casp6 (B,D,F,H).

Xiang Liu (119470)
Heng Zhang (320479)
Xiao-Jun Wang (321924)
Lan-Fen Li (345034)
Xiao-Dong Su (258998)

February 2013

A, B: SAD phases from phaser prior to any refinement steps. C, D: SAD phases form resol...

Electron density difference maps.

Sarah Barelier (251705)
Sarah E. Boyce (434826)
Inbar Fish (434827)
Marcus Fischer (44253)
David B. Goodin (434828)
Brian K. Shoichet (434829)

July 2013

Initial Fo−Fc maps contoured at 3σ for (A) 10, (B) 14, (C) <b...

Electron density for the dynamic segment.

Ruairi Collins (240622)
Ann-Louise Johansson (334101)
Tobias Karlberg (240615)
Natalia Markova (334222)
Susanne van den Berg (240619)
Kenneth Olesen (334225)
Martin Hammarström (240633)
Alex Flores (334226)
Herwig Schüler (215638)
Lovisa Holmberg Schiavone (9766)
Peter Brzezinski (187129)
Elias S. J. Arnér (145944)
Martin Högbom (240624)

February 2013

A and B) Stereo figure of an Fo-Fc difference electron density omit map of the segment surroundin...

Difference electron density map for the FAK/TAE226 structure.

Daniel Lietha (193525)
Michael J. Eck (240706)

February 2013

Fo-Fc electron density calculated from experimental data and the final model with TAE226 removed ...

Figure S1. ssLig Electron Density Maps

John M. Pascal
Oleg V. Tsodikov
Greg L. Hura
Wei Song
Elizabeth A. Cotner
Scott Classen
Alan E. Tomkinson
John A. Tainer
Tom Ellenberger

December 2014

2.8 Å experimentally phased electron density for ssLig (left panel). 2.1 Å σA-weighted 2Fo-Fc electr...

(Fo–Fc) difference electron density map calculated at 2.5 σ cut off before adding water oxygen atoms in the structure of unbound protein (A), cytidine in the structure of the complex with protein (B) and uridine in the structure of the complex with protein (C).

Sanket Kaushik (429878)
Nagendra Singh (359528)
Shavait Yamini (429879)
Avinash Singh (429880)
Mau Sinha (290097)
Ashish Arora (210036)
Punit Kaur (36251)
Sujata Sharma (36250)
Tej P. Singh (36252)

July 2013

(Fo–Fc) difference electron density map calculated at 2.5 σ cut off before adding water oxygen at...

2Fobs - Fcalc electron density maps from the carbohydrates contoured at 1.0 σ.

Gustavo Arruda Bezerra (141145)
Roland Viertlmayr (568820)
Tales Rocha Moura (568821)
Plínio Delatorre (78903)
Bruno Anderson Matias Rocha (568822)
Kyria Santiago do Nascimento (568823)
Jozi Godoy Figueiredo (568824)
Ingrid Gonçalves Bezerra (568825)
Cicero Silvano Teixeira (568826)
Rafael Conceição Simões (568827)
Celso Shiniti Nagano (568828)
Nylane Maria Nunes de Alencar (568829)
Karl Gruber (141169)
Benildo Sousa Cavada (568830)

May 2014

(A) Xman. (B) Man(α1-3)Man(α1-O)Me, (C) Man(α1-4)Man(α1-O)Me.</p

Atomic model fitting of the inside-out particle into the EM density.

Nayab Malik (4455445)
Abhay Kotecha (395425)
Sarah Gold (363614)
Amin Asfor (4455448)
Jingshan Ren (395427)
Juha T. Huiskonen (191734)
Tobias J. Tuthill (258499)
Elizabeth E. Fry (235531)
David I. Stuart (29765)

September 2017

The 5.2 Å electron density map (blue mesh) of the inside-out particle allowed the unambiguous fit...

Electron density maps of SA2-13 bound in the K234R SHV active site.

Elizabeth A. Rodkey (510008)
Marisa L. Winkler (510009)
Christopher R. Bethel (299558)
Sundar Ram Reddy Pagadala (510010)
John D. Buynak (299562)
Robert A. Bonomo (188763)
Focco van den Akker (158508)

January 2014

|Fo|-|Fc| electron difference density map is contoured at 3.0σ prior to inc...

Figure S1. Experimentally Phased Electron Density at 3.2Å after Density Modification

Hideki Aihara
Wai Mun Huang
Tom Ellenberger

July 2015

Electron density within 2.5Å from the atomic model is shown at a contour level of 1σ above the mean....

Electron density difference maps.

Nevena Todorova (379761)
Adam J. Makarucha (493794)
Nicholas D. M. Hine (493795)
Arash A. Mostofi (493796)
Irene Yarovsky (379764)

December 2013

Electron density difference maps of representative frames from the clustering analysis shown by a...

Electron-density map (coefficients 2∣Fobs∣ − ∣Fcalc∣) of the NcImpα/SV40NLS structure in the area corresponding to SV40NLS peptides (contoured at 2.0 s.d.) at major (A) and minor (B) binding sites.

Natalia E. Bernardes (757846)
Agnes A. S. Takeda (757847)
Thiago R. Dreyer (757848)
Fernanda Z. Freitas (757849)
Maria Célia Bertolini (162709)
Marcos R. M. Fontes (336896)

June 2015

Electron-density map (coefficients 2∣Fobs∣ − ∣Fcalc</...

Stereogram of electron density map at the coiled-coil interface in the region of the E613/R617/D620 bulge.

Daqi Tu (354440)
Yiqun Li (182105)
Hyun Kyu Song (31003)
Angela V. Toms (354443)
Christopher J. Gould (354447)
Scott B. Ficarro (354450)
Jarrod A. Marto (104616)
Bruce L. Goode (91341)
Michael J. Eck (240706)

February 2013

Chain C is shown in yellow and chain D in grey. The σA weighted 2FO – F<sub...

2Fo-Fc electron density distributions for each of the 18 new beta-turn types, plus two examples from the Other category.

Maxim Shapovalov (365188)
Slobodan Vucetic (3506393)
Roland L. Dunbrack Jr. (431730)

March 2019

The PDB entries and other data for each turn are given in BetaTurnLib18 (S1 Table and S1 Text). Cont...

Electron density maps of d(ATTAAT)2.

Francisco J. Acosta-Reyes (703677)
Elida Alechaga (703678)
Juan A. Subirana (164308)
J. Lourdes Campos (164312)

March 2015

2Fo-Fc electron density maps at 1σ level, with Refmac5 map sharpening [<a href="http://www.ploson...

Electron density is shown around Cys136 in smPncA (A,C,E,G) and Cys264 in Casp6 (B,D,F,H).

Xiang Liu (119470)
Heng Zhang (320479)
Xiao-Jun Wang (321924)
Lan-Fen Li (345034)
Xiao-Dong Su (258998)

February 2013

A, B: SAD phases from phaser prior to any refinement steps. C, D: SAD phases form resol...

Electron density difference maps.

Sarah Barelier (251705)
Sarah E. Boyce (434826)
Inbar Fish (434827)
Marcus Fischer (44253)
David B. Goodin (434828)
Brian K. Shoichet (434829)

July 2013

Initial Fo−Fc maps contoured at 3σ for (A) 10, (B) 14, (C) <b...

Electron density for the dynamic segment.

Ruairi Collins (240622)
Ann-Louise Johansson (334101)
Tobias Karlberg (240615)
Natalia Markova (334222)
Susanne van den Berg (240619)
Kenneth Olesen (334225)
Martin Hammarström (240633)
Alex Flores (334226)
Herwig Schüler (215638)
Lovisa Holmberg Schiavone (9766)
Peter Brzezinski (187129)
Elias S. J. Arnér (145944)
Martin Högbom (240624)

February 2013

A and B) Stereo figure of an Fo-Fc difference electron density omit map of the segment surroundin...

Difference electron density map for the FAK/TAE226 structure.

Daniel Lietha (193525)
Michael J. Eck (240706)

February 2013

Fo-Fc electron density calculated from experimental data and the final model with TAE226 removed ...

Figure S1. ssLig Electron Density Maps

John M. Pascal
Oleg V. Tsodikov
Greg L. Hura
Wei Song
Elizabeth A. Cotner
Scott Classen
Alan E. Tomkinson
John A. Tainer
Tom Ellenberger

December 2014

2.8 Å experimentally phased electron density for ssLig (left panel). 2.1 Å σA-weighted 2Fo-Fc electr...

(Fo–Fc) difference electron density map calculated at 2.5 σ cut off before adding water oxygen atoms in the structure of unbound protein (A), cytidine in the structure of the complex with protein (B) and uridine in the structure of the complex with protein (C).

Sanket Kaushik (429878)
Nagendra Singh (359528)
Shavait Yamini (429879)
Avinash Singh (429880)
Mau Sinha (290097)
Ashish Arora (210036)
Punit Kaur (36251)
Sujata Sharma (36250)
Tej P. Singh (36252)

July 2013

(Fo–Fc) difference electron density map calculated at 2.5 σ cut off before adding water oxygen at...

2Fobs - Fcalc electron density maps from the carbohydrates contoured at 1.0 σ.

Gustavo Arruda Bezerra (141145)
Roland Viertlmayr (568820)
Tales Rocha Moura (568821)
Plínio Delatorre (78903)
Bruno Anderson Matias Rocha (568822)
Kyria Santiago do Nascimento (568823)
Jozi Godoy Figueiredo (568824)
Ingrid Gonçalves Bezerra (568825)
Cicero Silvano Teixeira (568826)
Rafael Conceição Simões (568827)
Celso Shiniti Nagano (568828)
Nylane Maria Nunes de Alencar (568829)
Karl Gruber (141169)
Benildo Sousa Cavada (568830)

May 2014

(A) Xman. (B) Man(α1-3)Man(α1-O)Me, (C) Man(α1-4)Man(α1-O)Me.</p

Atomic model fitting of the inside-out particle into the EM density.

Nayab Malik (4455445)
Abhay Kotecha (395425)
Sarah Gold (363614)
Amin Asfor (4455448)
Jingshan Ren (395427)
Juha T. Huiskonen (191734)
Tobias J. Tuthill (258499)
Elizabeth E. Fry (235531)
David I. Stuart (29765)

September 2017

The 5.2 Å electron density map (blue mesh) of the inside-out particle allowed the unambiguous fit...

Electron density maps of SA2-13 bound in the K234R SHV active site.

Elizabeth A. Rodkey (510008)
Marisa L. Winkler (510009)
Christopher R. Bethel (299558)
Sundar Ram Reddy Pagadala (510010)
John D. Buynak (299562)
Robert A. Bonomo (188763)
Focco van den Akker (158508)

January 2014

|Fo|-|Fc| electron difference density map is contoured at 3.0σ prior to inc...

Figure S1. Experimentally Phased Electron Density at 3.2Å after Density Modification

Hideki Aihara
Wai Mun Huang
Tom Ellenberger

July 2015

Electron density within 2.5Å from the atomic model is shown at a contour level of 1σ above the mean....

Electron density difference maps.

Nevena Todorova (379761)
Adam J. Makarucha (493794)
Nicholas D. M. Hine (493795)
Arash A. Mostofi (493796)
Irene Yarovsky (379764)

December 2013

Electron density difference maps of representative frames from the clustering analysis shown by a...

Electron-density map (coefficients 2∣Fobs∣ − ∣Fcalc∣) of the NcImpα/SV40NLS structure in the area corresponding to SV40NLS peptides (contoured at 2.0 s.d.) at major (A) and minor (B) binding sites.

Natalia E. Bernardes (757846)
Agnes A. S. Takeda (757847)
Thiago R. Dreyer (757848)
Fernanda Z. Freitas (757849)
Maria Célia Bertolini (162709)
Marcos R. M. Fontes (336896)

June 2015

Electron-density map (coefficients 2∣Fobs∣ − ∣Fcalc</...

Stereogram of electron density map at the coiled-coil interface in the region of the E613/R617/D620 bulge.

Daqi Tu (354440)
Yiqun Li (182105)
Hyun Kyu Song (31003)
Angela V. Toms (354443)
Christopher J. Gould (354447)
Scott B. Ficarro (354450)
Jarrod A. Marto (104616)
Bruce L. Goode (91341)
Michael J. Eck (240706)

February 2013

Chain C is shown in yellow and chain D in grey. The σA weighted 2FO – F<sub...

2Fo-Fc electron density distributions for each of the 18 new beta-turn types, plus two examples from the Other category.

Maxim Shapovalov (365188)
Slobodan Vucetic (3506393)
Roland L. Dunbrack Jr. (431730)

March 2019

The PDB entries and other data for each turn are given in BetaTurnLib18 (S1 Table and S1 Text). Cont...

Electron density maps of d(ATTAAT)2.

Francisco J. Acosta-Reyes (703677)
Elida Alechaga (703678)
Juan A. Subirana (164308)
J. Lourdes Campos (164312)

March 2015

2Fo-Fc electron density maps at 1σ level, with Refmac5 map sharpening [<a href="http://www.ploson...

Electron density is shown around Cys136 in smPncA (A,C,E,G) and Cys264 in Casp6 (B,D,F,H).

Xiang Liu (119470)
Heng Zhang (320479)
Xiao-Jun Wang (321924)
Lan-Fen Li (345034)
Xiao-Dong Su (258998)

February 2013

A, B: SAD phases from phaser prior to any refinement steps. C, D: SAD phases form resol...

Electron density difference maps.

Abstract

Extracted data

Electron density difference maps.

Abstract

Extracted data

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