Identification of the comparisons between the differentially expressed probe sets of the different groups.

<p>(A) Identification of the top 50 significantly upregulated genes of 1-, 2-, and 3-cycles DSS colitis (FDR<0.05, FC>2) (most upregulated compared to controls). The analysis of these genes is shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0068876#pone-0068876-g008" target="_blank">Figure 8</a>. (B) Identification of the top 50 significantly upregulated genes of acute colitis and made comparison with the genes identified in chronic colitis. The analysis of these genes is shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0068876#pone-0068876-g009" target="_blank">Figure 9</a>. (C) Identification of the top 50 significantly most upregulated genes (fold change compared to controls) after additional recovery. The analysis of these genes is shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0068876#pone-0068876-g010" target="_blank">Figure 10A</a>. (*after removal of duplicates, of gene probe sets with unmapped IDs and of genes coding for gammaglobulin chains).